Translations:Nextflow/15/en: Difference between revisions

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Once we will be ready to launch the pipeline, Nextflow will look at the <code>nextflow.config</code> file and also at the <code>~/.nextflow/config</code> files (if it exists) to control how to run the workflow. The nf-core pipeline all have a default config, a test config, and container configs (singularity, podman, etc). On top of that we will need a custom config for the cluster (Narval, Beluga, Cedar or Graham) you are running on. We can think of Nextflow pipelines that could also run on Niagara if they where design with that specific cluster in mind, but we would generally discourage people to try running nf-core or any other generic Nextflow pipelines there.
Once we are ready to launch the pipeline, Nextflow will look at the <code>nextflow.config</code> file and also at the <code>~/.nextflow/config</code> files (if it exists) to control how to run the workflow. The nf-core pipelines all have a default config, a test config, and container configs (singularity, podman, etc). We will also need a custom config for the cluster (Narval, Béluga, Cedar or Graham) you are running on. Nextflow pipelines could also run on Niagara if they where designed with that specific cluster in mind, but we would generally discourage you to try running nf-core or any other generic Nextflow pipeline there.

Revision as of 21:25, 27 March 2023

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Message definition (Nextflow)
When the pipeline is launched, Nextflow will look at the <code>nextflow.config</code> file in that folder and also at the <code>~/.nextflow/config</code> file (if it exists) in your home to control how to run the workflow. The nf-core pipelines all have a default configuration, a test configuration, and container configurations (singularity, podman, etc). You will need to provide a custom configuration for the cluster you are running on (Narval, Béluga, Cedar or Graham), a simple configuration is provided in next section. Nextflow pipelines could also run on [[Niagara]] if they were designed with that specific cluster in mind, but we generally discourage you to run nf-core or any other generic Nextflow pipeline on Niagara.

Once we are ready to launch the pipeline, Nextflow will look at the nextflow.config file and also at the ~/.nextflow/config files (if it exists) to control how to run the workflow. The nf-core pipelines all have a default config, a test config, and container configs (singularity, podman, etc). We will also need a custom config for the cluster (Narval, Béluga, Cedar or Graham) you are running on. Nextflow pipelines could also run on Niagara if they where designed with that specific cluster in mind, but we would generally discourage you to try running nf-core or any other generic Nextflow pipeline there.

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