BUSCO/en: Difference between revisions

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{{Command|busco --offline --in genome.fna --out TEST --lineage_dataset bacteria_odb10 --mode genome --cpu ${SLURM_CPUS_PER_TASK:-1} --download_path busco_download/}}
{{Command|busco --offline --in genome.fna --out TEST --lineage_dataset bacteria_odb10 --mode genome --cpu ${SLURM_CPUS_PER_TASK:-1} --download_path busco_download/}}


Command to run multiple genomes that would be saved in the <i>genome/</i> directory (in this example, the <i>genome/</i> folder would need to be in the current directory; otherwise, you need to provide the full path):
Command to run multiple genomes that would be saved in the genome directory (in this example, the <i>genome/</i> folder would need to be in the current directory; otherwise, you need to provide the full path):


{{Command|busco --offline --in genome/ --out TEST --lineage_dataset bacteria_odb10 --mode genome --cpu ${SLURM_CPUS_PER_TASK:-1} --download_path busco_download/}}
{{Command|busco --offline --in genome/ --out TEST --lineage_dataset bacteria_odb10 --mode genome --cpu ${SLURM_CPUS_PER_TASK:-1} --download_path busco_download/}}
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