Biomolecular simulation: Difference between revisions

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(→‎Software Packages: added external links for LAMMPS, DL_POLY since no internal links available)
(→‎Software Packages: added links for MM/MD-related modules recently installed)
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* [http://www.scd.stfc.ac.uk/SCD/44516.aspx DL_POLY]
* [http://www.scd.stfc.ac.uk/SCD/44516.aspx DL_POLY]
* [http://lammps.sandia.gov/ LAMMPS]
* [http://lammps.sandia.gov/ LAMMPS]
* [[Gaussian]] is available on Graham only
* [https://simtk.org/home/openmm OpenMM]
* [http://www.plumed-code.org PLUMED], a library for code development related to the calculation of free energy in molecular dynamics simulations. See also [[GROMACS]].
* [https://www.rosettacommons.org Rosetta]

Revision as of 18:36, 15 January 2018


This article is a draft

This is not a complete article: This is a draft, a work in progress that is intended to be published into an article, which may or may not be ready for inclusion in the main wiki. It should not necessarily be considered factual or authoritative.



General

At this location the Biomolecular Simulation Team will create a discipline guide on Biomolecular Simulation and Molecular Dynamics.

Software Packages

The following software packages are available on Compute Canada's HPC resources: