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GBrowse: Difference between revisions
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* module load bioperl/1.7.1 | * module load bioperl/1.7.1 | ||
* bp_seqfeature_load.pl -c –d DATABASE:mysql_read_default_file=/home/USERNAME/.my.cnf example_genomic_sequence.fa header_file | * bp_seqfeature_load.pl -c –d DATABASE:mysql_read_default_file=/home/USERNAME/.my.cnf example_genomic_sequence.fa header_file | ||
where in this example DATABASE is the name of your | where in this example DATABASE is the name of your database and example_genomic_sequence.fa is the fasta file containing the entire genome that you want to visualize on gbrowse. header_file contains details about the length of the chromosomes. Here is an example of header file: | ||
<pre> | <pre> | ||