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As an example, if your <tt>seq.fa</tt> file is <tt>3MB</tt>, you could read block of <tt>1MB</tt> and GNU Parallel will create 3 jobs, thus using 3 cores. If we would have requested 10 cores in our task, we would be wasting 7 cores. Therefore, '''the block size is important'''. We can also let GNU Parallel decide, as done below. | As an example, if your <tt>seq.fa</tt> file is <tt>3MB</tt>, you could read block of <tt>1MB</tt> and GNU Parallel will create 3 jobs, thus using 3 cores. If we would have requested 10 cores in our task, we would be wasting 7 cores. Therefore, '''the block size is important'''. We can also let GNU Parallel decide, as done below. | ||
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See also [[GNU Parallel#Handling_large_files|handling large files]] with GNU Parallel. | See also [[GNU Parallel#Handling_large_files|handling large files]] with GNU Parallel. | ||