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FreeSurfer: Difference between revisions
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FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. | =Introduction= | ||
[https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki FreeSurfer] is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. | |||
=FreeSurfer 5.3 as a global module= | =FreeSurfer 5.3 as a global module= | ||
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In the Compute Canada software stack, you may load the <code>freesurfer/5.3.0</code> module. For newer versions, please install FreeSurfer in your home directory or in your project space. | In the Compute Canada software stack, you may load the <code>freesurfer/5.3.0</code> module. For newer versions, please install FreeSurfer in your home directory or in your project space. | ||
<code> | FreeSurfer come up up with a script <code>FreeSurferEnv.sh</code> that should be sources to setup correctly environment variables such as PATH and PERL5LIB: | ||
<code>source $EBROOTFREESURFER/FreeSurferEnv.sh</code> | |||
=FreeSurfer 6.0 and newer versions= | =FreeSurfer 6.0 and newer versions= | ||