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FreeSurfer: Difference between revisions
→Hippocampus and brainstem processing
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To perform processing of the hippocampus and brainstem, download and install matlab runtime 2012b from the freesurfer website: | To perform processing of the hippocampus and brainstem, download and install matlab runtime 2012b from the freesurfer website: | ||
{{Commands | |||
module load freesurfer/6.0.0 | |||
cd $FREESURFER_HOME | |||
curl "http://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime? | |||
action=AttachFile&do=get&target=runtime2012bLinux.tar.gz" -o "matlab_runtime2012bLinux.tar.gz" | |||
tar xvf matlab_runtime2012bLinux.tar.gz | |||
}} | |||
==Example of working batch script for freesurfer version >= 6.0.0== | ==Example of working batch script for freesurfer version >= 6.0.0== | ||