Bioinformatics: Difference between revisions
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Examine that directory and its subdirectories, e.g. with | Examine that directory and its subdirectories, e.g. with | ||
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{{Command|ls /cvmfs/ref.mugqic/genomes}} | {{Command|ls /cvmfs/ref.mugqic/genomes}} | ||
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{{Command|ls /cvmfs/ref.mugqic/genomes/species}} | {{Command|ls /cvmfs/ref.mugqic/genomes/species}} | ||
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Revision as of 21:19, 30 November 2022
Software
See Available software for a list of bioinformatics applications on our systems. You can sort on 'Type', where bioinformatics software is categorized as 'bio'.
Some bioinformatics software is available as Python packages, which do not appear on the above list. See Available Python wheels for a list of Python "wheels" customized for Alliance clusters.
Data
Some genome databases are available on our clusters, in /cvmfs/ref.mugqic/genomes.
Examine that directory and its subdirectories, e.g. with
[name@server ~]$ ls /cvmfs/ref.mugqic/genomes
or
[name@server ~]$ ls /cvmfs/ref.mugqic/genomes/species