CESM: Difference between revisions

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Revision as of 16:48, 6 September 2023

This article is a draft

This is not a complete article: This is a draft, a work in progress that is intended to be published into an article, which may or may not be ready for inclusion in the main wiki. It should not necessarily be considered factual or authoritative.

Porting and Validating

Local machine file

Create and edit the file ~/.cime/config_machines.xml from the following minimal content per cluster:

BelugaCedarGrahamNarvalNiagara

File : ~/.cime/config_machines.xml

<?xml version="1.0"?>

<config_machines version="2.0">
  <machine MACH="beluga">
    <DESC>https://docs.alliancecan.ca/wiki/Béluga/en</DESC>
    <NODENAME_REGEX>b[cegl].*.int.ets1.calculquebec.ca</NODENAME_REGEX>

    <OS>LINUX</OS>
    <COMPILERS>intel,gnu</COMPILERS>
    <MPILIBS>openmpi,intelmpi</MPILIBS>

    <PROJECT>def-EDIT_THIS</PROJECT>
    <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>

    <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
    <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
    <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>

    <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
    <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
    <MAX_TASKS_PER_NODE>40</MAX_TASKS_PER_NODE>
    <MAX_MPITASKS_PER_NODE>40</MAX_MPITASKS_PER_NODE>
    <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
  </machine>
</config_machines>

File : ~/.cime/config_machines.xml

<?xml version="1.0"?>

<config_machines version="2.0">
  <machine MACH="cedar">
    <DESC>https://docs.alliancecan.ca/wiki/Cedar</DESC>
    <NODENAME_REGEX>c[de].*.computecanada.ca</NODENAME_REGEX>

    <OS>LINUX</OS>
    <COMPILERS>intel,gnu</COMPILERS>
    <MPILIBS>openmpi,intelmpi</MPILIBS>

    <PROJECT>def-EDIT_THIS</PROJECT>
    <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>

    <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
    <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
    <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>

    <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
    <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
    <MAX_TASKS_PER_NODE>48</MAX_TASKS_PER_NODE>
    <MAX_MPITASKS_PER_NODE>48</MAX_MPITASKS_PER_NODE>
    <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
  </machine>
</config_machines>

File : ~/.cime/config_machines.xml

<?xml version="1.0"?>

<config_machines version="2.0">
  <machine MACH="graham">
    <DESC>https://docs.alliancecan.ca/wiki/Graham</DESC>
    <NODENAME_REGEX>gra.*</NODENAME_REGEX>

    <OS>LINUX</OS>
    <COMPILERS>intel,gnu</COMPILERS>
    <MPILIBS>openmpi,intelmpi</MPILIBS>

    <PROJECT>def-EDIT_THIS</PROJECT>
    <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>

    <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
    <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
    <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>

    <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
    <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
    <MAX_TASKS_PER_NODE>44</MAX_TASKS_PER_NODE>
    <MAX_MPITASKS_PER_NODE>44</MAX_MPITASKS_PER_NODE>
    <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
  </machine>
</config_machines>

File : ~/.cime/config_machines.xml

<?xml version="1.0"?>

<config_machines version="2.0">
  <machine MACH="narval">
    <DESC>https://docs.alliancecan.ca/wiki/Narval/en</DESC>
    <NODENAME_REGEX>n[acgl].*.narval.calcul.quebec</NODENAME_REGEX>

    <OS>LINUX</OS>
    <COMPILERS>intel,gnu</COMPILERS>
    <MPILIBS>openmpi,intelmpi</MPILIBS>

    <PROJECT>def-EDIT_THIS</PROJECT>
    <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>

    <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
    <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
    <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>

    <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
    <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
    <MAX_TASKS_PER_NODE>64</MAX_TASKS_PER_NODE>
    <MAX_MPITASKS_PER_NODE>64</MAX_MPITASKS_PER_NODE>
    <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
  </machine>
</config_machines>

File : ~/.cime/config_machines.xml

<?xml version="1.0"?>

<config_machines version="2.0">
  <machine MACH="niagara">
    <DESC>https://docs.alliancecan.ca/wiki/Niagara</DESC>
    <NODENAME_REGEX>nia.*.scinet.local</NODENAME_REGEX>

    <OS>LINUX</OS>
    <COMPILERS>intel,gnu</COMPILERS>
    <MPILIBS>openmpi,intelmpi</MPILIBS>

    <PROJECT>def-EDIT_THIS</PROJECT>
    <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>

    <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
    <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
    <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>

    <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
    <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
    <MAX_TASKS_PER_NODE>40</MAX_TASKS_PER_NODE>
    <MAX_MPITASKS_PER_NODE>40</MAX_MPITASKS_PER_NODE>
    <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
  </machine>
</config_machines>

Validate your XML machine file with the following commands:

[name@server ~]$ module load cesm/2.1.3 && xmllint --noout --schema $EBROOTCESM/cime/config/xml_schemas/config_machines.xsd ~/.cime/config_machines.xml
/home/username/.cime/config_machines.xml validates

Check the official template for additional parameters:

[name@server ~]$ less $EBROOTCESM/cime/config/xml_schemas/config_machines_template.xml

Reference

Main website

Retrieved from "https://docs.alliancecan.ca/mediawiki/index.php?title=CESM&oldid=143229"

Draft