Translations:Nextflow/15/en: Difference between revisions
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When the pipeline is launched, Nextflow will look at the <code>nextflow.config</code> file and also at the <code>~/.nextflow/config</code> file (if it exists) to control how to run the workflow. The nf-core pipelines all have a default configuration, a test configuration, and container configurations (singularity, podman, etc). You will need to provide a custom configuration for the cluster you are running on (Narval, Béluga, Cedar or Graham), a simple configuration is provided in next section. Nextflow pipelines could also run on [[Niagara]] if they were designed with that specific cluster in mind, but we generally discourage you to run nf-core or any other generic Nextflow pipeline on Niagara. | When the pipeline is launched, Nextflow will look at the <code>nextflow.config</code> file in that folder and also at the <code>~/.nextflow/config</code> file (if it exists) in your home to control how to run the workflow. The nf-core pipelines all have a default configuration, a test configuration, and container configurations (singularity, podman, etc). You will need to provide a custom configuration for the cluster you are running on (Narval, Béluga, Cedar or Graham), a simple configuration is provided in next section. Nextflow pipelines could also run on [[Niagara]] if they were designed with that specific cluster in mind, but we generally discourage you to run nf-core or any other generic Nextflow pipeline on Niagara. | ||
Latest revision as of 20:59, 1 May 2024
When the pipeline is launched, Nextflow will look at the nextflow.config file in that folder and also at the ~/.nextflow/config file (if it exists) in your home to control how to run the workflow. The nf-core pipelines all have a default configuration, a test configuration, and container configurations (singularity, podman, etc). You will need to provide a custom configuration for the cluster you are running on (Narval, Béluga, Cedar or Graham), a simple configuration is provided in next section. Nextflow pipelines could also run on Niagara if they were designed with that specific cluster in mind, but we generally discourage you to run nf-core or any other generic Nextflow pipeline on Niagara.