User:Ppomorsk: Difference between revisions
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(make hdf5 explicit) |
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|lang="sh" | |lang="sh" | ||
|contents= | |contents= | ||
module load boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6 | module load hdf5-mpi/1.8.18 boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6 | ||
mkdir fenics && cd fenics | mkdir fenics && cd fenics | ||
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pip3 install ply | pip3 install ply | ||
cd dolfin | cd dolfin | ||
mkdir build && cd build && cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true -DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include -DCMAKE_INSTALL_PREFIX=$HOME/software/dolfin && nice make -j install && cd - | mkdir build && cd build && cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true -DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include -DHDF5_ROOT=$EBROOTHDF5 -DCMAKE_INSTALL_PREFIX=$HOME/software/dolfin && nice make -j install && cd - | ||
}} | }} | ||
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|lang="sh" | |lang="sh" | ||
|contents= | |contents= | ||
module load boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6 | module load hdf5-mpi/1.8.18 boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6 | ||
source ~/software/dolfin/share/dolfin/dolfin.conf | source ~/software/dolfin/share/dolfin/dolfin.conf | ||
source ~/fenics/bin/activate | source ~/fenics/bin/activate | ||
}} | }} | ||
Revision as of 17:03, 17 July 2017
Pawel Pomorski works for SHARCNET at the University of Waterloo.
Fenics
Compile
File : fenics_install.sh
module load hdf5-mpi/1.8.18 boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6
mkdir fenics && cd fenics
git clone https://bitbucket.org/fenics-project/fiat.git
git clone https://bitbucket.org/fenics-project/instant.git
git clone https://bitbucket.org/fenics-project/dijitso.git
git clone https://bitbucket.org/fenics-project/ufl.git
git clone https://bitbucket.org/fenics-project/ffc.git
git clone https://bitbucket.org/fenics-project/dolfin.git
pyvenv ~/fenics
source ~/fenics/bin/activate
cd fiat && pip3 install . && cd -
cd instant && pip3 install . && cd -
cd dijitso && pip3 install . && cd -
cd ufl && pip3 install . && cd -
cd ffc && pip3 install . && cd -
pip3 install ply
cd dolfin
mkdir build && cd build && cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true -DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include -DHDF5_ROOT=$EBROOTHDF5 -DCMAKE_INSTALL_PREFIX=$HOME/software/dolfin && nice make -j install && cd -
Run
File : fenics_run.sh
module load hdf5-mpi/1.8.18 boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6
source ~/software/dolfin/share/dolfin/dolfin.conf
source ~/fenics/bin/activate