FEniCS: Difference between revisions
Jump to navigation
Jump to search
m (set number of build processes to 8 (otherwise errors on graham due to hitting limits)) |
(update instructions to prevent linking with default libraries) |
||
| Line 34: | Line 34: | ||
pip3 install ply | pip3 install ply | ||
cd dolfin | cd dolfin | ||
mkdir build && cd build | mkdir build && cd build | ||
cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true -DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include -DHDF5_ROOT=$EBROOTHDF5 -DCMAKE_INSTALL_PREFIX=$HOME/software/dolfin -DCMAKE_SKIP_RPATH=ON -DRT_LIBRARY=$EBROOTNIXPKGS/lib64/librt.so -DHDF5_C_LIBRARY_dl=$EBROOTNIXPKGS/lib64/libdl.so -DHDF5_C_LIBRARY_m=$EBROOTNIXPKGS/lib64/libm.so -DHDF5_C_LIBRARY_pthread=$EBROOTNIXPKGS/lib64/libpthread.so -DHDF5_C_LIBRARY_z=$EBROOTNIXPKGS/lib/libz.so | |||
nice make -j 8 install && cd - | |||
sed -i s'^export LD_LIBRARY_PATH=/lib^#export LD_LIBRARY_PATH=/lib^' ~/software/dolfin/share/dolfin/dolfin.conf | sed -i s'^export LD_LIBRARY_PATH=/lib^#export LD_LIBRARY_PATH=/lib^' ~/software/dolfin/share/dolfin/dolfin.conf | ||
Revision as of 18:23, 17 October 2017
FEniCS is a popular open-source computing platform for solving partial differential equations (PDEs).
Installation instructions
File : fenics_install.sh
module load hdf5-mpi/1.8.18 boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6
mkdir fenics && cd fenics
git clone https://bitbucket.org/fenics-project/fiat.git
git clone https://bitbucket.org/fenics-project/instant.git
git clone https://bitbucket.org/fenics-project/dijitso.git
git clone https://bitbucket.org/fenics-project/ufl.git
git clone https://bitbucket.org/fenics-project/ffc.git
git clone https://bitbucket.org/fenics-project/dolfin.git
chmod u+w ~/fenics/*/.git/objects/pack/*
pyvenv ~/fenics
source ~/fenics/bin/activate
cd fiat && pip3 install . && cd -
cd instant && pip3 install . && cd -
cd dijitso && pip3 install . && cd -
cd ufl && pip3 install . && cd -
cd ffc && pip3 install . && cd -
pip3 install ply
cd dolfin
mkdir build && cd build
cmake .. -DDOLFIN_SKIP_BUILD_TESTS=true -DEIGEN3_INCLUDE_DIR=$EBROOTEIGEN/include -DHDF5_ROOT=$EBROOTHDF5 -DCMAKE_INSTALL_PREFIX=$HOME/software/dolfin -DCMAKE_SKIP_RPATH=ON -DRT_LIBRARY=$EBROOTNIXPKGS/lib64/librt.so -DHDF5_C_LIBRARY_dl=$EBROOTNIXPKGS/lib64/libdl.so -DHDF5_C_LIBRARY_m=$EBROOTNIXPKGS/lib64/libm.so -DHDF5_C_LIBRARY_pthread=$EBROOTNIXPKGS/lib64/libpthread.so -DHDF5_C_LIBRARY_z=$EBROOTNIXPKGS/lib/libz.so
nice make -j 8 install && cd -
sed -i s'^export LD_LIBRARY_PATH=/lib^#export LD_LIBRARY_PATH=/lib^' ~/software/dolfin/share/dolfin/dolfin.conf
To run the installed program, perform the following operations to set up your environment:
File : fenics_run.sh
module load hdf5-mpi/1.8.18 boost eigen python/3 python35-scipy-stack/2017a petsc/3.7.5 fftw-mpi/3.3.6
source ~/software/dolfin/share/dolfin/dolfin.conf
source ~/fenics/bin/activate