CP2K

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CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.

Example job

Here we will use the static calculation example from the CP2K website

First, log into one of Canada Clusters and download the needed files with the following commands:

wget https://www.cp2k.org/_media/static_calculation.tgz
tar xvfz static_calculation.tgz	
cd static_calculation/sample_output_no_smearing

Then, in that directory, create the following job submission script, with the account name changed to the one you are using.

File : mpi_job.sh

#!/bin/bash
#SBATCH --account=def-someuser
#SBATCH --ntasks=4               # number of MPI processes
#SBATCH --mem-per-cpu=4G      # memory; default unit is megabytes
#SBATCH --time=0-00:15           # time (DD-HH:MM)

module load cp2k/7.1
srun cp2k.popt -o Si_bulk8.out Si_bulk8.inp

To submit this job, execute:

sbatch mpi_job.sh

To see if the job completed, run the command

sq

If your job is no longer listed, that means it has completed.

The output of CP2K will be located in the file Si_bulk8.out. There will also be an output file named slurm-*.out which should be empty if the calculation completed without error.