QIIME/en: Difference between revisions

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|singularity exec qiime2-2019.10.sif qiime tools import ...
|singularity exec qiime2-2019.10.sif qiime tools import ...
}}
}}
=== Using an EasyBuild wheel ===
In case the Singularity solution isn't working for you, we also provide an EasyBuild package that can be used with the <tt>eb</tt> command. To install version 2019.7, use
{{Commands
|eb --rebuild Miniconda3-4.7.10.eb QIIME2-2019.7.eb
}}
This takes a while, but will provide you with the qiime/2019.7 module that you need to load before using QIIME 2.
{{Commands
|module load qiime2/2019.7
}}
Because this creates all the packages required for QIIME, it generates too many files in your home directory. We recommend that you remove those files once you are done with all computations since it uses almost half of your total allocation.  The Singularity solution described above creates one big file instead of thousand of smaller files, which is why we recommend it.


=References =
=References =


[http://qiime.org/ QIIME homepage]<br>
[http://qiime.org/ QIIME homepage]<br>
[https://easybuild.readthedocs.io/en/latest/ EasyBuild documentation]<br>
<!--[https://docs.conda.io/projects/conda/en/latest/user-guide/getting-started.html Getting started with Conda]<br>-->
<!--[https://docs.conda.io/projects/conda/en/latest/user-guide/getting-started.html Getting started with Conda]<br>-->
[[Category:Bioinformatics]]
[[Category:Bioinformatics]]
[[Category:User Installed Software]]
[[Category:User Installed Software]]
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