MetaPhlAn: Difference between revisions

MetaPhlAn (view source)

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 |parallel wget ::: http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/mpa_vJan21_CHOCOPhlAnSGB_202103.tar http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/mpa_vJan21_CHOCOPhlAnSGB_202103_marker_info.txt.bz2 http://cmprod1.cibio.unitn.it/biobakery4/metaphlan_databases/mpa_vJan21_CHOCOPhlAnSGB_202103_species.txt.bz2
 }}
 Note that this step '''cannot''' be done from compute nodes on most clusters but must be done from a login node.
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 = Running MetaPhlAn =
-Once the databases are downloaded and unpacked, you can submit a job.
+Once the databases have been downloaded and extracted, you can submit a job to compute the database indices. You may edit
-Edit to your needs the following submission script:
+according to your needs the following job submission script,
 {{File
    |name=metaphlan-job.sh