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Modules avx512: Difference between revisions
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| align="center" | math | | align="center" | math | ||
| align="center" | 0.7.1, 0.8.2, 0.9.10, 0.10.2 | | align="center" | 0.7.1, 0.8.2, 0.9.10, 0.10.2 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++. Homepage: https://igraph.org URL: https://igraph.org Compatible modules: python/3.8, python/3.9, python/3.10, python/3.11 Extensions: python-igraph-0.10 | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++. Homepage: https://igraph.org URL: https://igraph.org Compatible modules: python/3.8, python/3.9, python/3.10, python/3.11 Extensions: python-igraph-0.9.10 Keyword:math<br /><br /><br /></div> | ||
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| align="center" | [https://www.broadinstitute.org/software/igv/ igv] | | align="center" | [https://www.broadinstitute.org/software/igv/ igv] | ||
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| align="center" | [https://github.com/DerrickWood/kraken2/wiki kraken2] | | align="center" | [https://github.com/DerrickWood/kraken2/wiki kraken2] | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 2.0.7-beta, 2.0.8-beta, 2.0.9-beta, 2.1.1, 2.1.2 | | align="center" | 2.0.7-beta, 2.0.8-beta, 2.0.9-beta, 2.1.1, 2.1.2, 2.1.3 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. Homepage: https://github.com/DerrickWood/kraken2/wiki URL: https://github.com/DerrickWood/kraken2/wiki Keyword:bio<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. Homepage: https://github.com/DerrickWood/kraken2/wiki URL: https://github.com/DerrickWood/kraken2/wiki Keyword:bio<br /><br /><br /></div> | ||
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| align="center" | [http://bioinfo.lifl.fr/RNA/sortmerna/ sortmerna] | | align="center" | [http://bioinfo.lifl.fr/RNA/sortmerna/ sortmerna] | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 2.1, 4.2.0, 4.3.4 | | align="center" | 2.1, 4.2.0, 4.3.4, 4.3.6 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. Homepage: http://bioinfo.lifl.fr/RNA/sortmerna/ URL: http://bioinfo.lifl.fr/RNA/sortmerna/ Keyword:bio<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. Homepage: http://bioinfo.lifl.fr/RNA/sortmerna/ URL: http://bioinfo.lifl.fr/RNA/sortmerna/ Keyword:bio<br /><br /><br /></div> | ||
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| align="center" | [https://transdecoder.github.io/ transdecoder] | | align="center" | [https://transdecoder.github.io/ transdecoder] | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 3.0.1, 5.5.0 | | align="center" | 3.0.1, 5.5.0, 5.7.1 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. Homepage: https://transdecoder.github.io/ URL: https://transdecoder.github.io/ Keyword:bio<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. Homepage: https://transdecoder.github.io/ URL: https://transdecoder.github.io/ Keyword:bio<br /><br /><br /></div> | ||
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