38,760
edits
BUSCO/en: Difference between revisions
Updating to match new version of source page
(Updating to match new version of source page) |
(Updating to match new version of source page) |
||
| Line 55: | Line 55: | ||
===== <b>6.1</b> Using the <code>busco</code> command ===== | ===== <b>6.1</b> Using the <code>busco</code> command ===== | ||
This is the preferred option. Type this command in your working directory to download a particular dataset, for example | This is the preferred option. Type this command in your working directory to download a particular dataset, for example | ||
{{ | {{Command | ||
|busco --download bacteria_odb10 | |busco --download bacteria_odb10 | ||
}} | }} | ||
| Line 179: | Line 179: | ||
====SEPP parameters==== | ====SEPP parameters==== | ||
<b>10.</b> To use SEPP parameters, you need to install SEPP locally in your virtual environment. This should be done | <b>10.</b> To use SEPP parameters, you need to install SEPP locally in your virtual environment. This should be done from the login node. | ||
<b>10.1.</b> Activate your BUSCO virtual environment. | <b>10.1.</b> Activate your BUSCO virtual environment. | ||