Modules avx512: Difference between revisions

| align="center" | [https://arrow.apache.org arrow]

| align="center" | tools

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Apache Arrow is a cross-language development platform for in-memory data. Homepage: https://arrow.apache.org URL: https://arrow.apache.org Compatible modules: python/3.11, python/3.10 Keyword:tools<br /><br /><br /></div>

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| align="center" | -

| align="center" | 1.03

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| align="center" | [https://bitbucket.org/gavinband/bgen/src/default/ bgen]

| align="center" | [https://github.com/flame/blis/ blis]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. Homepage: https://github.com/flame/blis/ URL: https://github.com/flame/blis/<br /><br /><br /></div>

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| align="center" | [https://www.comsol.com comsol]

| align="center" | phys

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: COMSOL Multiphysics is a general-purpose software platform, based on advanced numerical methods, for modeling and simulating physics-based problems. Homepage: https://www.comsol.com URL: https://www.comsol.com Keyword:phys<br /><br /><br /></div>

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| align="center" | [https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release flexiblas]

| align="center" | -

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| align="center" | [http://www.flintlib.org/ flint]

| align="center" | [https://gcc.gnu.org/ gcc]

| align="center" | tools

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). Homepage: https://gcc.gnu.org/ URL: https://gcc.gnu.org/ Keyword:tools<br /><br /><br /></div>

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| align="center" | [https://github.com/NVIDIA/gdrcopy gdrcopy]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. Homepage: https://github.com/NVIDIA/gdrcopy URL: https://github.com/NVIDIA/gdrcopy<br /><br /><br /></div>

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| align="center" | vis

| align="center" | 5.99.0

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| align="center" | [http://grackle.readthedocs.io grackle]

| align="center" | chem

| align="center" | 2021.7-0.5.1

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| align="center" | [https://www.gnu.org/software/gsl/ gsl]

| align="center" | [https://www.open-mpi.org/projects/hwloc/ hwloc]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. Homepage: https://www.open-mpi.org/projects/hwloc/ URL: https://www.open-mpi.org/projects/hwloc/<br /><br /><br /></div>

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| align="center" | [https://ofiwg.github.io/libfabric/ libfabric]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric. Homepage: https://ofiwg.github.io/libfabric/ URL: https://ofiwg.github.io/libfabric/<br /><br /><br /></div>

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| align="center" | bio

| align="center" | 2.0.1

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| align="center" | [https://genome.sph.umich.edu/wiki/Minimac4 minimac4]

| align="center" | chem

| align="center" | 2.4.1, 3.0.0, 3.1.1

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| align="center" | [https://openbabel.org openbabel-omp]

| align="center" | [https://www.open-mpi.org/ openmpi]

| align="center" | mpi

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Open MPI Project is an open source MPI-3 implementation. Homepage: https://www.open-mpi.org/ URL: https://www.open-mpi.org/ Keyword:mpi<br /><br /><br /></div>

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| align="center" | [https://pmix.org/ pmix]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability. Homepage: https://pmix.org/ URL: https://pmix.org/<br /><br /><br /></div>

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| align="center" | geo

| align="center" | 1.0

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| align="center" | [https://www.vicbioinformatics.com/software.prokka.shtml prokka]

| align="center" | 3.3.0, 3.6.1, 3.7.1, 3.9.1, 3.11.1, 3.12.3, 3.19.4, 3.21.3, 24.4

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Google Protocol Buffers Homepage: https://github.com/google/protobuf/ URL: https://github.com/google/protobuf/ Keyword:tools<br /><br /><br /></div>

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| align="center" | [https://psfex.readthedocs.io/en/latest/index.html psfex]

| align="center" | [http://qiime2.org/ qiime2]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data. Homepage: http://qiime2.org/ URL: http://qiime2.org/<br /><br /><br /></div>

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| align="center" | [https://www.openucx.org/ ucc]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. Homepage: https://www.openucx.org/ URL: https://www.openucx.org/<br /><br /><br /></div>

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| align="center" | [https://www.openucx.org/ ucx]

| align="center" | -

| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Unified Communication X An open-source production grade communication framework for data centric and high-performance applications Homepage: https://www.openucx.org/ URL: https://www.openucx.org/<br /><br /><br /></div>

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