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* [[AMBER]] | |||
* [[GROMACS]] | * [[GROMACS]] | ||
* [[NAMD]] | * [[NAMD]] | ||
* [http://www.scd.stfc.ac.uk/SCD/44516.aspx DL_POLY] | * [http://www.scd.stfc.ac.uk/SCD/44516.aspx DL_POLY] | ||
* [http:// | * [http://glotzerlab.engin.umich.edu/hoomd-blue/ HOOMD-blue] | ||
* [[LAMMPS]] | |||
* [https://openkim.org/ OpenKIM], the Knowledgebase of Interatomic Models | * [https://openkim.org/ OpenKIM], the Knowledgebase of Interatomic Models | ||
* [ | * [[OpenMM]] | ||
* [ | * [https://www.plumed.org PLUMED], a library for code development related to the calculation of free energy in molecular dynamics simulations. See also [[GROMACS]]. | ||
* [https://www.rosettacommons.org Rosetta] | * [https://www.rosettacommons.org Rosetta] | ||
* [https://swift.cmbi.umcn.nl/gv/dssp/ DSSP] | |||
* [[VMD]] |