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GBrowse: Difference between revisions
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where GROUPID is your group id and USERID is the your username. There is a symbolic link from this directory to ${HOME}/gbrowse/conf just for simplicity so that you can get access to files within this directory easier. Files in this directory should be readable for all member of the group therefore, please do not change the group permission of files in this directory. | where GROUPID is your group id and USERID is the your username. There is a symbolic link from this directory to ${HOME}/gbrowse/conf just for simplicity so that you can get access to files within this directory easier. Files in this directory should be readable for all member of the group therefore, please do not change the group permission of files in this directory. | ||
===Setup Database | ===Setup Database=== | ||
GBrowse uses two sources of input, files and database. Before using GBrowse users require to setup their own database. More information about database of computecanada is here. If you decide to use MySQL as your database you can use the following setup in your corresponding GBrowse config files to make MySQL connection from your GBrowse: | GBrowse uses two sources of input, files and database. Before using GBrowse users require to setup their own database. More information about database of computecanada is here. If you decide to use MySQL as your database you can use the following setup in your corresponding GBrowse config files to make MySQL connection from your GBrowse: | ||