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where in this example USERNAME is your username, USERNAME_example_genome is name of your database and example_genomic_sequence.fa is the fasta file containing the entire genome that you want to visualize on gbrowse. header_file contains details about the length of the chromosomes. Here is an example of header file: | where in this example USERNAME is your username, USERNAME_example_genome is name of your database and example_genomic_sequence.fa is the fasta file containing the entire genome that you want to visualize on gbrowse. header_file contains details about the length of the chromosomes. Here is an example of header file: | ||
##sequence-region I 1 15072434 | |||
##sequence-region II 1 15279421 | |||
##sequence-region III 1 13783801 | ##sequence-region III 1 13783801 | ||
##sequence-region IV 1 17493829 | ##sequence-region IV 1 17493829 | ||
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We would like to remind you that running above commands need to be performed by job scheduler, (do not run it on the head node) | |||