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Job arrays: Difference between revisions
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(Added bash code for the selection of input file based on array task) |
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my_app $SLURM_ARRAY_TASK_ID some_arg another_arg | my_app $SLURM_ARRAY_TASK_ID some_arg another_arg | ||
Here is an example bash script that you can insert into your slurm batch script that uses the $SLURM_ARRAY_TASK_ID to select a different input file from the datafiles directory | Here is an example bash script that you can insert into your slurm batch script that uses the $SLURM_ARRAY_TASK_ID to select a different input file from the datafiles directory: | ||
FILES=($(ls -1 datafiles/*)) | FILES=($(ls -1 datafiles/*)) | ||
input_file=${FILES[$SLURM_ARRAY_TASK_ID]} | input_file=${FILES[$SLURM_ARRAY_TASK_ID]} | ||