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QIIME/en: Difference between revisions
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module load qiime2/2019.7 | module load qiime2/2019.7 | ||
</pre> | </pre> | ||
=== With singularity === | |||
It is also possible to run QIIME2 through singularity. A docker image is available at [https://hub.docker.com/u/qiime2 qiime2]. First, you need to build a singularity image from [[Singularity/en#Creating_an_image_using_Docker_Hub|docker]]: | |||
{{Commands | |||
|module load singularity | |||
|singularity build qiime2-2019.10.sif docker://qiime2/core:2019.10 | |||
}} | |||
Then run your code as any other singularity [[Singularity/en|job]]. | |||
On first importing data into QIIME format you may receive an error ending with a message like this: | |||
<pre> | |||
Timezone offset does not match system offset: 0 != -18000. Please, check your config files. | |||
</pre> | |||
This can be worked around by setting a time zone before invoking Singularity: | |||
{{Commands | |||
|export TZ{{=}}'UTC' | |||
|singularity exec qiime2-2019.10.sif qiime tools import ... | |||
}} | |||
=References = | =References = | ||