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GATK: Difference between revisions
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===Using more resources than asked for === | ===Using more resources than asked for === | ||
Sometimes GATK/JAVA applications will use more memory or cpus/threads than the ones requested. This is often generated by the JAVA garbage collection. To add control for this, you can add '''-XX:ConcGCThreads=1''' to the '''--java-options''' argument. | Sometimes GATK/JAVA applications will use more memory or cpus/threads than the ones requested. This is often generated by the JAVA garbage collection. To add control for this, you can add '''-XX:ConcGCThreads=1''' to the '''--java-options''' argument. | ||
===FAQ on GATK === | |||
You can find GATK's FAQ's in their [https://gatk.broadinstitute.org/hc/en-us/sections/360007226791-Troubleshooting-GATK4-Issues website]. | |||
=References = | =References = | ||