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FreeSurfer: Difference between revisions
→Installation in your Home with Easybuild
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==Installation in your Home with Easybuild== | ==Installation in your Home with Easybuild== | ||
The following procedure will install FreeSurfer 6.0.0 in your home directory in <code>.local/easybuild/software/2017/Core/freesurfer/6.0.0/</code>. | The following procedure will install FreeSurfer 6.0.0 in your home directory in <code>/home/$USER/.local/easybuild/software/2017/Core/freesurfer/6.0.0/</code>. | ||
# Go to the folder that contains the <code>freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz</code> archive | # Go to the folder that contains the <code>freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz</code> archive | ||
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# register for the FreeSurfer license key [https://surfer.nmr.mgh.harvard.edu/registration.html] | # register for the FreeSurfer license key [https://surfer.nmr.mgh.harvard.edu/registration.html] | ||
# Your user license will have to go in: <code>$HOME/.local/easybuild/software/2017/Core/freesurfer/6.0.0/.license</code> | # Your user license will have to go in: <code>$HOME/.local/easybuild/software/2017/Core/freesurfer/6.0.0/.license</code> | ||
<code> | <code> | ||
module load freesurfer/6.0.0 | module load freesurfer/6.0.0 | ||
cd $FREESURFER_HOME | cd $FREESURFER_HOME | ||
nano .license</code> | nano .license | ||
</code> | |||
add the license text (example): | add the license text (example): | ||
<code> | <code> | ||
name.name@university.ca | name.name@university.ca | ||
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type CTRL+x, y, enter | type CTRL+x, y, enter | ||
To load the private module: <code>module load freesurfer/6.0.0</code> | To load the private module: | ||
<code>module load freesurfer/6.0.0</code> | |||
When this page was created, Compute Canada was supporting up to version 6.0.1. You can check for [https://github.com/ComputeCanada/easybuild-easyconfigs/tree/computecanada-master/easybuild/easyconfigs/f/FreeSurfer newer versions here]. | When this page was created, Compute Canada was supporting up to version 6.0.1. You can check for [https://github.com/ComputeCanada/easybuild-easyconfigs/tree/computecanada-master/easybuild/easyconfigs/f/FreeSurfer newer versions here]. | ||