cc_staff
415
edits
FreeSurfer: Difference between revisions
→Hippocampus and brainstem processing
| Line 54: | Line 54: | ||
To perform processing of the hippocampus and brainstem, download and install matlab runtime 2012b from the freesurfer website: | To perform processing of the hippocampus and brainstem, download and install matlab runtime 2012b from the freesurfer website: | ||
<pre> | |||
module load freesurfer/6.0.0 | |||
cd $FREESURFER_HOME | |||
curl "http://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2012bLinux.tar.gz" -o matlab_runtime2012bLinux.tar.gz | |||
tar xvf matlab_runtime2012bLinux.tar.gz | |||
</pre> | |||
==Example of working batch script for freesurfer version >= 6.0.0== | ==Example of working batch script for freesurfer version >= 6.0.0== | ||