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GATK: Difference between revisions
→Running GATK via singularity
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module load singularity | module load singularity | ||
singularity exec -B $PWD:/home -B /scratch/someuser:/outputs \ | singularity exec -B $PWD:/home -B /scratch/someuser:/outputs \ | ||
-B /projects/someuser/path/to/inputs:/inputs <path to the image>/gatk {+options and arguments for running | -B /projects/someuser/path/to/inputs:/inputs <path to the image>/gatk {+options and arguments for running GATK} | ||
</pre> | </pre> | ||