Translations:SAIGE/13/en
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1. Load the appropriate modules.
[name@server ~]$ module load gcc r/4.2.2 savvy superlu flexiblas
2. Create the installation directory.
[name@server ~]$ mkdir -p ~/.local/R/$EBVERSIONR/
[name@server ~]$ export R_LIBS=~/.local/R/$EBVERSIONR/
3. Install the R dependencies.
[name@server ~]$ R -e 'install.packages(c("Rcpp", "RcppParallel", "data.table", "RcppArmadillo", "SPAtest", "RcppEigen", "BH", "optparse", "SKAT", "MetaSKAT", "qlcMatrix", "RhpcBLASctl", "RSQLite", "dplyr"), repos="https://cloud.r-project.org/")'