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A Docker image of GATK can be found [https://hub.docker.com/r/broadinstitute/gatk here] and other versions are available | A Docker image of GATK can be found [https://hub.docker.com/r/broadinstitute/gatk here] and other versions are available on this [https://hub.docker.com/r/broadinstitute/gatk/tags page]. You will need first to build an Apptainer image from the Docker image; | ||
to get the latest version for example, you can run the following commands on the cluster | |||
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