Modules avx512: Difference between revisions

no edit summary
No edit summary
No edit summary
Line 308: Line 308:
| align="center" | bio
| align="center" | bio
| align="center" | 3.0.4
| align="center" | 3.0.4
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes Homepage: http://www.rannala.org/?page_id=245 Keyword:bio<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes Homepage: http://www.rannala.org/?page_id=245 URL: http://www.rannala.org/?page_id=245 Keyword:bio<br /><br /><br /></div>
|-
|-
| align="center" | [http://www.rannala.org/inference-of-recent-migration bayesass3-snps]
| align="center" | [http://www.rannala.org/inference-of-recent-migration bayesass3-snps]
Line 508: Line 508:
| align="center" | phys
| align="center" | phys
| align="center" | 1.2.5
| align="center" | 1.2.5
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Boltzmann Transport Properties (BoltzTraP) is a program for calculating the semi-classic transport coefficients. Homepage: http://www.icams.de/content/departments/cmat/boltztrap/ Keyword:phys<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Boltzmann Transport Properties (BoltzTraP) is a program for calculating the semi-classic transport coefficients. Homepage: http://www.icams.de/content/departments/cmat/boltztrap/ URL: http://www.icams.de/content/departments/cmat/boltztrap/ Keyword:phys<br /><br /><br /></div>
|-
|-
| align="center" | [https://www.boost.org/ boost]
| align="center" | [https://www.boost.org/ boost]
Line 1,503: Line 1,503:
| align="center" | bio
| align="center" | bio
| align="center" | 1.30, 1.31
| align="center" | 1.30, 1.31
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FragGeneScan is an application for finding (fragmented) genes in short reads. Homepage: http://omics.informatics.indiana.edu/FragGeneScan/ URL: http://omics.informatics.indiana.edu/FragGeneScan/ Keyword:bio<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FragGeneScan is an application for finding (fragmented) genes in short reads. Homepage: http://omics.informatics.indiana.edu/FragGeneScan/ Keyword:bio<br /><br /><br /></div>
|-
|-
| align="center" | [http://grigoriefflab.janelia.org/frealign frealign]
| align="center" | [http://grigoriefflab.janelia.org/frealign frealign]
Line 1,743: Line 1,743:
| align="center" | -
| align="center" | -
| align="center" | 3.3.2, 3.3.8
| align="center" | 3.3.2, 3.3.8
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop Homepage: https://www.glfw.org URL: https://www.glfw.org Compatible modules: python/3.10, python/3.10, python/3.10, python/3.10, python/3.11, python/3.11, python/3.11, python/3.11 Extensions: glfw-2.6.2<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop Homepage: https://www.glfw.org URL: https://www.glfw.org<br /><br /><br /></div>
|-
|-
| align="center" | [https://ccb.jhu.edu/software/glimmerhmm glimmerhmm]
| align="center" | [https://ccb.jhu.edu/software/glimmerhmm glimmerhmm]
Line 2,847: Line 2,847:
| align="center" | [https://sourceforge.net/projects/matio/ matio]
| align="center" | [https://sourceforge.net/projects/matio/ matio]
| align="center" | io
| align="center" | io
| align="center" | 1.5.2, 1.5.19, 1.5.26
| align="center" | 1.5.19, 1.5.26
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: matio is an C library for reading and writing Matlab MAT files. Homepage: https://sourceforge.net/projects/matio/ URL: https://sourceforge.net/projects/matio/ Keyword:io<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: matio is an C library for reading and writing Matlab MAT files. Homepage: https://sourceforge.net/projects/matio/ URL: https://sourceforge.net/projects/matio/ Keyword:io<br /><br /><br /></div>
|-
|-
Line 3,013: Line 3,013:
| align="center" | bio
| align="center" | bio
| align="center" | 2.0.1
| align="center" | 2.0.1
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Minimac3 is a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac and minimac2. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. Homepage: http://genome.sph.umich.edu/wiki/Minimac3 URL: http://genome.sph.umich.edu/wiki/Minimac3 Keyword:bio<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Minimac3 is a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac and minimac2. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. Homepage: http://genome.sph.umich.edu/wiki/Minimac3 Keyword:bio<br /><br /><br /></div>
|-
|-
| align="center" | [https://genome.sph.umich.edu/wiki/Minimac4 minimac4]
| align="center" | [https://genome.sph.umich.edu/wiki/Minimac4 minimac4]
Line 3,158: Line 3,158:
| align="center" | bio
| align="center" | bio
| align="center" | 3.23, 4.0.0beta2
| align="center" | 3.23, 4.0.0beta2
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. Homepage: http://mummer.sourceforge.net/ URL: http://mummer.sourceforge.net/ Keyword:bio<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. Homepage: http://mummer.sourceforge.net/ Keyword:bio<br /><br /><br /></div>
|-
|-
| align="center" | [https://graal.ens-lyon.fr/MUMPS/ mumps-metis]
| align="center" | [https://graal.ens-lyon.fr/MUMPS/ mumps-metis]
Line 4,158: Line 4,158:
| align="center" | geo
| align="center" | geo
| align="center" | 1.0
| align="center" | 1.0
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: proj4-fortran is a f77 and f90 wrappers for proj4, a cartograohic projections library. Homepage: https://github.com/mhagdorn/proj4-fortran Keyword:geo<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: proj4-fortran is a f77 and f90 wrappers for proj4, a cartograohic projections library. Homepage: https://github.com/mhagdorn/proj4-fortran URL: https://github.com/mhagdorn/proj4-fortran Keyword:geo<br /><br /><br /></div>
|-
|-
| align="center" | [https://www.vicbioinformatics.com/software.prokka.shtml prokka]
| align="center" | [https://www.vicbioinformatics.com/software.prokka.shtml prokka]
Line 4,462: Line 4,462:
| align="center" | [https://repast.github.io/ repasthpc]
| align="center" | [https://repast.github.io/ repasthpc]
| align="center" | bio
| align="center" | bio
| align="center" | 2.0, 2.2.0, 2.3.0
| align="center" | 2.2.0, 2.3.0
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have collectively been under continuous development for over 15 years: Repast for High Performance Computing 2.2.0, released on 30 September 2016, is a lean and expert-focused C++-based modeling system that is designed for use on large computing clusters and supercomputers. Homepage: https://repast.github.io/ URL: https://repast.github.io/ Keyword:bio<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have collectively been under continuous development for over 15 years: Repast for High Performance Computing 2.2.0, released on 30 September 2016, is a lean and expert-focused C++-based modeling system that is designed for use on large computing clusters and supercomputers. Homepage: https://repast.github.io/ URL: https://repast.github.io/ Keyword:bio<br /><br /><br /></div>
|-
|-
Line 5,128: Line 5,128:
| align="center" | -
| align="center" | -
| align="center" | 6.0.1.5, 8.6.1.6
| align="center" | 6.0.1.5, 8.6.1.6
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NVIDIA TensorRT is a platform for high-performance deep learning inference Homepage: https://developer.nvidia.com/tensorrt URL: https://developer.nvidia.com/tensorrt Compatible modules: python/3.8, python/3.9, python/3.10, python/3.11<br /><br /><br /></div>
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NVIDIA TensorRT is a platform for high-performance deep learning inference Homepage: https://developer.nvidia.com/tensorrt URL: https://developer.nvidia.com/tensorrt Compatible modules: python/3.10, python/3.11<br /><br /><br /></div>
|-
|-
| align="center" | [https://github.com/tesseract-ocr/tesseract tesseract]
| align="center" | [https://github.com/tesseract-ocr/tesseract tesseract]