41,378
edits
Modules avx512: Difference between revisions
Jump to navigation
Jump to search
no edit summary
No edit summary |
No edit summary |
||
| Line 308: | Line 308: | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 3.0.4 | | align="center" | 3.0.4 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes Homepage: http://www.rannala.org/?page_id=245 Keyword:bio<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes Homepage: http://www.rannala.org/?page_id=245 URL: http://www.rannala.org/?page_id=245 Keyword:bio<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [http://www.rannala.org/inference-of-recent-migration bayesass3-snps] | | align="center" | [http://www.rannala.org/inference-of-recent-migration bayesass3-snps] | ||
| Line 508: | Line 508: | ||
| align="center" | phys | | align="center" | phys | ||
| align="center" | 1.2.5 | | align="center" | 1.2.5 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Boltzmann Transport Properties (BoltzTraP) is a program for calculating the semi-classic transport coefficients. Homepage: http://www.icams.de/content/departments/cmat/boltztrap/ Keyword:phys<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Boltzmann Transport Properties (BoltzTraP) is a program for calculating the semi-classic transport coefficients. Homepage: http://www.icams.de/content/departments/cmat/boltztrap/ URL: http://www.icams.de/content/departments/cmat/boltztrap/ Keyword:phys<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [https://www.boost.org/ boost] | | align="center" | [https://www.boost.org/ boost] | ||
| Line 1,503: | Line 1,503: | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 1.30, 1.31 | | align="center" | 1.30, 1.31 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FragGeneScan is an application for finding (fragmented) genes in short reads. Homepage | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: FragGeneScan is an application for finding (fragmented) genes in short reads. Homepage: http://omics.informatics.indiana.edu/FragGeneScan/ Keyword:bio<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [http://grigoriefflab.janelia.org/frealign frealign] | | align="center" | [http://grigoriefflab.janelia.org/frealign frealign] | ||
| Line 1,743: | Line 1,743: | ||
| align="center" | - | | align="center" | - | ||
| align="center" | 3.3.2, 3.3.8 | | align="center" | 3.3.2, 3.3.8 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop Homepage: https://www.glfw.org URL: https://www.glfw.org | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop Homepage: https://www.glfw.org URL: https://www.glfw.org<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [https://ccb.jhu.edu/software/glimmerhmm glimmerhmm] | | align="center" | [https://ccb.jhu.edu/software/glimmerhmm glimmerhmm] | ||
| Line 2,847: | Line 2,847: | ||
| align="center" | [https://sourceforge.net/projects/matio/ matio] | | align="center" | [https://sourceforge.net/projects/matio/ matio] | ||
| align="center" | io | | align="center" | io | ||
| align="center" | | | align="center" | 1.5.19, 1.5.26 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: matio is an C library for reading and writing Matlab MAT files. Homepage: https://sourceforge.net/projects/matio/ URL: https://sourceforge.net/projects/matio/ Keyword:io<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: matio is an C library for reading and writing Matlab MAT files. Homepage: https://sourceforge.net/projects/matio/ URL: https://sourceforge.net/projects/matio/ Keyword:io<br /><br /><br /></div> | ||
|- | |- | ||
| Line 3,013: | Line 3,013: | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 2.0.1 | | align="center" | 2.0.1 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Minimac3 is a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac and minimac2. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. Homepage | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Minimac3 is a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac and minimac2. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. Homepage: http://genome.sph.umich.edu/wiki/Minimac3 Keyword:bio<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [https://genome.sph.umich.edu/wiki/Minimac4 minimac4] | | align="center" | [https://genome.sph.umich.edu/wiki/Minimac4 minimac4] | ||
| Line 3,158: | Line 3,158: | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | 3.23, 4.0.0beta2 | | align="center" | 3.23, 4.0.0beta2 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. Homepage | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. Homepage: http://mummer.sourceforge.net/ Keyword:bio<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [https://graal.ens-lyon.fr/MUMPS/ mumps-metis] | | align="center" | [https://graal.ens-lyon.fr/MUMPS/ mumps-metis] | ||
| Line 4,158: | Line 4,158: | ||
| align="center" | geo | | align="center" | geo | ||
| align="center" | 1.0 | | align="center" | 1.0 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: proj4-fortran is a f77 and f90 wrappers for proj4, a cartograohic projections library. Homepage: https://github.com/mhagdorn/proj4-fortran Keyword:geo<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: proj4-fortran is a f77 and f90 wrappers for proj4, a cartograohic projections library. Homepage: https://github.com/mhagdorn/proj4-fortran URL: https://github.com/mhagdorn/proj4-fortran Keyword:geo<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [https://www.vicbioinformatics.com/software.prokka.shtml prokka] | | align="center" | [https://www.vicbioinformatics.com/software.prokka.shtml prokka] | ||
| Line 4,462: | Line 4,462: | ||
| align="center" | [https://repast.github.io/ repasthpc] | | align="center" | [https://repast.github.io/ repasthpc] | ||
| align="center" | bio | | align="center" | bio | ||
| align="center" | | | align="center" | 2.2.0, 2.3.0 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have collectively been under continuous development for over 15 years: Repast for High Performance Computing 2.2.0, released on 30 September 2016, is a lean and expert-focused C++-based modeling system that is designed for use on large computing clusters and supercomputers. Homepage: https://repast.github.io/ URL: https://repast.github.io/ Keyword:bio<br /><br /><br /></div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: The Repast Suite is a family of advanced, free, and open source agent-based modeling and simulation platforms that have collectively been under continuous development for over 15 years: Repast for High Performance Computing 2.2.0, released on 30 September 2016, is a lean and expert-focused C++-based modeling system that is designed for use on large computing clusters and supercomputers. Homepage: https://repast.github.io/ URL: https://repast.github.io/ Keyword:bio<br /><br /><br /></div> | ||
|- | |- | ||
| Line 5,128: | Line 5,128: | ||
| align="center" | - | | align="center" | - | ||
| align="center" | 6.0.1.5, 8.6.1.6 | | align="center" | 6.0.1.5, 8.6.1.6 | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NVIDIA TensorRT is a platform for high-performance deep learning inference Homepage: https://developer.nvidia.com/tensorrt URL: https://developer.nvidia.com/tensorrt Compatible modules: | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: NVIDIA TensorRT is a platform for high-performance deep learning inference Homepage: https://developer.nvidia.com/tensorrt URL: https://developer.nvidia.com/tensorrt Compatible modules: python/3.10, python/3.11<br /><br /><br /></div> | ||
|- | |- | ||
| align="center" | [https://github.com/tesseract-ocr/tesseract tesseract] | | align="center" | [https://github.com/tesseract-ocr/tesseract tesseract] | ||