CESM: Difference between revisions

CESM (view source)

Revision as of 22:59, 25 June 2024

2,893 bytes added , 4 months ago

update config_machines.xml- Beluga

Shuber

cc_staff

147

edits

@@ Line 32: / Line 32: @@
      <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>
-     <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
+     <CIME_OUTPUT_ROOT>/scratch/$USER/cesm/output</CIME_OUTPUT_ROOT>
-     <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
+     <DIN_LOC_ROOT>/scratch/$USER/cesm/inputdata</DIN_LOC_ROOT>
-     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>
+    <DIN_LOC_ROOT_CLMFORC>${DIN_LOC_ROOT}/atm/datm7</DIN_LOC_ROOT_CLMFORC>
+     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/case</DOUT_S_ROOT>
+    <GMAKE>make</GMAKE>
+    <GMAKE_J>8</GMAKE_J>
      <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
      <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
@@ Line 42: / Line 44: @@
      <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
-     <mpirun mpilib="default">
+     <mpirun mpilib="intelmpi">
-       <executable>srun</executable>
+       <executable>mpirun</executable>
+      <arguments>
+        <arg name="anum_tasks"> -np {{ total_tasks }}</arg>
+        <!--arg name="labelstdout">-prepend-rank</arg> -->
+      </arguments>
      </mpirun>
+    <module_system type="module" allow_error="true">
+      <init_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/perl</init_path>
+      <init_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/env_modules_python.py</init_path>
+      <init_path lang="csh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/csh</init_path>
+      <init_path lang="sh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/sh</init_path>
+      <cmd_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod perl</cmd_path>
+      <cmd_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python</cmd_path>
+      <cmd_path lang="csh">module</cmd_path>
+      <cmd_path lang="sh">module</cmd_path>
+      <modules>
+      <command name="purge"/>
+ 	<command name="load">StdEnv/2023</command>
+      </modules>
+      <modules compiler="intel">
+	<command name="load">intel/2023.2.1</command>
+	<command name="load">git-annex/10.20231129</command>
+	<command name="load">cmake/3.27.7</command>
+      </modules>
+      <modules mpilib="intelmpi">
+        <command name="load">openmpi/4.1.5</command>
+        <command name="load">hdf5-mpi/1.14.2</command>
+        <command name="load">netcdf-c++4-mpi/4.3.1</command>
+        <command name="load">netcdf-fortran-mpi/4.6.1</command>
+        <command name="load">netcdf-mpi/4.9.2</command>
+	<command name="load">xml-libxml/2.0208</command>
+	<command name="load">flexiblas/3.3.1</command>
+      </modules>
+    </module_system>
+    <environment_variables>
+            <env name="NETCDF_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/pnetcdf/1.12.3</env>
+            <env name="NETCDF_FORTRAN_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-fortran-mpi/4.6.1/</env>
+            <env name="NETCDF_C_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-c++4-mpi/4.3.1/</env>
+            <env name="NETLIB_LAPACK_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/imkl/2023.2.0/mkl/2023.2.0/</env>
+	    <env name="OMP_STACKSIZE">256M</env>
+            <env name="I_MPI_CC">icc</env>
+            <env name="I_MPI_FC">ifort</env>
+            <env name="I_MPI_F77">ifort</env>
+            <env name="I_MPI_F90">ifort</env>
+            <env name="I_MPI_CXX">icpc</env>
+    </environment_variables>
+    <resource_limits>
+      <resource name="RLIMIT_STACK">300000000</resource>
+    </resource_limits>
    </machine>