CESM: Difference between revisions

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CESM (view source)

Revision as of 23:07, 25 June 2024

11,368 bytes added ,  4 months ago
update remaining config_machine.xml files
(update config_machines.xml- Beluga)
(update remaining config_machine.xml files)
Line 123: Line 123:
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>


     <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
     <CIME_OUTPUT_ROOT>/scratch/$USER/cesm/output</CIME_OUTPUT_ROOT>
     <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
     <DIN_LOC_ROOT>/scratch/$USER/cesm/inputdata</DIN_LOC_ROOT>
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>
    <DIN_LOC_ROOT_CLMFORC>${DIN_LOC_ROOT}/atm/datm7</DIN_LOC_ROOT_CLMFORC>
 
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/case</DOUT_S_ROOT>
    <GMAKE>make</GMAKE>
    <GMAKE_J>8</GMAKE_J>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
Line 133: Line 135:
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>


     <mpirun mpilib="default">
     <mpirun mpilib="intelmpi">
       <executable>srun</executable>
       <executable>mpirun</executable>
      <arguments>
        <arg name="anum_tasks"> -np [[:Template:Total tasks]]</arg>
      </arguments>
     </mpirun>
     </mpirun>
    <module_system type="module" allow_error="true">
      <init_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/perl</init_path>
      <init_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/env_modules_python.py</init_path>
      <init_path lang="csh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/csh</init_path>
      <init_path lang="sh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/sh</init_path>
      <cmd_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod perl</cmd_path>
      <cmd_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python</cmd_path>
      <cmd_path lang="csh">module</cmd_path>
      <cmd_path lang="sh">module</cmd_path>
      <modules>
      <command name="purge"/>
<command name="load">StdEnv/2023</command>
      </modules>
      <modules compiler="intel">
<command name="load">intel/2023.2.1</command>
<command name="load">git-annex/10.20231129</command>
<command name="load">cmake/3.27.7</command>
      </modules>
      <modules mpilib="intelmpi">
        <command name="load">openmpi/4.1.5</command>
        <command name="load">hdf5-mpi/1.14.2</command>
        <command name="load">netcdf-c++4-mpi/4.3.1</command>
        <command name="load">netcdf-fortran-mpi/4.6.1</command>
        <command name="load">netcdf-mpi/4.9.2</command>
<command name="load">xml-libxml/2.0208</command>
<command name="load">flexiblas/3.3.1</command>
      </modules>
    </module_system>
    <environment_variables>
            <env name="NETCDF_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/pnetcdf/1.12.3</env>
            <env name="NETCDF_FORTRAN_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-fortran-mpi/4.6.1/</env>
            <env name="NETCDF_C_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-c++4-mpi/4.3.1/</env>
            <env name="NETLIB_LAPACK_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/imkl/2023.2.0/mkl/2023.2.0/</env>
    <env name="OMP_STACKSIZE">256M</env>
            <env name="I_MPI_CC">icc</env>
            <env name="I_MPI_FC">ifort</env>
            <env name="I_MPI_F77">ifort</env>
            <env name="I_MPI_F90">ifort</env>
            <env name="I_MPI_CXX">icpc</env>
    </environment_variables>
    <resource_limits>
      <resource name="RLIMIT_STACK">300000000</resource>
    </resource_limits>
   </machine>
   </machine>


Line 165: Line 213:
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>


     <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
     <CIME_OUTPUT_ROOT>/scratch/$USER/cesm/output</CIME_OUTPUT_ROOT>
     <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
     <DIN_LOC_ROOT>/scratch/$USER/cesm/inputdata</DIN_LOC_ROOT>
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>
    <DIN_LOC_ROOT_CLMFORC>${DIN_LOC_ROOT}/atm/datm7</DIN_LOC_ROOT_CLMFORC>
 
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/case</DOUT_S_ROOT>
    <GMAKE>make</GMAKE>
    <GMAKE_J>8</GMAKE_J>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
Line 175: Line 225:
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>


     <mpirun mpilib="default">
     <mpirun mpilib="intelmpi">
       <executable>srun</executable>
       <executable>mpirun</executable>
      <arguments>
        <arg name="anum_tasks"> -np [[:Template:Total tasks]]</arg>
      </arguments>
     </mpirun>
     </mpirun>
    <module_system type="module" allow_error="true">
      <init_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/perl</init_path>
      <init_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/env_modules_python.py</init_path>
      <init_path lang="csh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/csh</init_path>
      <init_path lang="sh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/sh</init_path>
      <cmd_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod perl</cmd_path>
      <cmd_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python</cmd_path>
      <cmd_path lang="csh">module</cmd_path>
      <cmd_path lang="sh">module</cmd_path>
      <modules>
      <command name="purge"/>
<command name="load">StdEnv/2023</command>
      </modules>
      <modules compiler="intel">
<command name="load">intel/2023.2.1</command>
<command name="load">git-annex/10.20231129</command>
<command name="load">cmake/3.27.7</command>
      </modules>
      <modules mpilib="intelmpi">
        <command name="load">openmpi/4.1.5</command>
        <command name="load">hdf5-mpi/1.14.2</command>
        <command name="load">netcdf-c++4-mpi/4.3.1</command>
        <command name="load">netcdf-fortran-mpi/4.6.1</command>
        <command name="load">netcdf-mpi/4.9.2</command>
<command name="load">xml-libxml/2.0208</command>
<command name="load">flexiblas/3.3.1</command>
      </modules>
    </module_system>
    <environment_variables>
            <env name="NETCDF_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/pnetcdf/1.12.3</env>
            <env name="NETCDF_FORTRAN_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-fortran-mpi/4.6.1/</env>
            <env name="NETCDF_C_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-c++4-mpi/4.3.1/</env>
            <env name="NETLIB_LAPACK_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/imkl/2023.2.0/mkl/2023.2.0/</env>
    <env name="OMP_STACKSIZE">256M</env>
            <env name="I_MPI_CC">icc</env>
            <env name="I_MPI_FC">ifort</env>
            <env name="I_MPI_F77">ifort</env>
            <env name="I_MPI_F90">ifort</env>
            <env name="I_MPI_CXX">icpc</env>
    </environment_variables>
    <resource_limits>
      <resource name="RLIMIT_STACK">300000000</resource>
    </resource_limits>
   </machine>
   </machine>


Line 207: Line 303:
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>


     <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
     <CIME_OUTPUT_ROOT>/scratch/$USER/cesm/output</CIME_OUTPUT_ROOT>
     <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
     <DIN_LOC_ROOT>/scratch/$USER/cesm/inputdata</DIN_LOC_ROOT>
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>
    <DIN_LOC_ROOT_CLMFORC>${DIN_LOC_ROOT}/atm/datm7</DIN_LOC_ROOT_CLMFORC>
 
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/case</DOUT_S_ROOT>
    <GMAKE>make</GMAKE>
    <GMAKE_J>8</GMAKE_J>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
Line 217: Line 315:
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>


     <mpirun mpilib="default">
     <mpirun mpilib="intelmpi">
       <executable>srun</executable>
       <executable>mpirun</executable>
      <arguments>
        <arg name="anum_tasks"> -np [[:Template:Total tasks]]</arg>
      </arguments>
     </mpirun>
     </mpirun>
    <module_system type="module" allow_error="true">
      <init_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/perl</init_path>
      <init_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/env_modules_python.py</init_path>
      <init_path lang="csh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/csh</init_path>
      <init_path lang="sh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/sh</init_path>
      <cmd_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod perl</cmd_path>
      <cmd_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python</cmd_path>
      <cmd_path lang="csh">module</cmd_path>
      <cmd_path lang="sh">module</cmd_path>
      <modules>
      <command name="purge"/>
<command name="load">StdEnv/2023</command>
      </modules>
      <modules compiler="intel">
<command name="load">intel/2023.2.1</command>
<command name="load">git-annex/10.20231129</command>
<command name="load">cmake/3.27.7</command>
      </modules>
      <modules mpilib="intelmpi">
        <command name="load">openmpi/4.1.5</command>
        <command name="load">hdf5-mpi/1.14.2</command>
        <command name="load">netcdf-c++4-mpi/4.3.1</command>
        <command name="load">netcdf-fortran-mpi/4.6.1</command>
        <command name="load">netcdf-mpi/4.9.2</command>
<command name="load">xml-libxml/2.0208</command>
<command name="load">flexiblas/3.3.1</command>
      </modules>
    </module_system>
    <environment_variables>
            <env name="NETCDF_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/pnetcdf/1.12.3</env>
            <env name="NETCDF_FORTRAN_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-fortran-mpi/4.6.1/</env>
            <env name="NETCDF_C_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-c++4-mpi/4.3.1/</env>
            <env name="NETLIB_LAPACK_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/imkl/2023.2.0/mkl/2023.2.0/</env>
    <env name="OMP_STACKSIZE">256M</env>
            <env name="I_MPI_CC">icc</env>
            <env name="I_MPI_FC">ifort</env>
            <env name="I_MPI_F77">ifort</env>
            <env name="I_MPI_F90">ifort</env>
            <env name="I_MPI_CXX">icpc</env>
    </environment_variables>
    <resource_limits>
      <resource name="RLIMIT_STACK">300000000</resource>
    </resource_limits>
   </machine>
   </machine>


Line 249: Line 393:
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>
     <CHARGE_ACCOUNT>def-EDIT_THIS</CHARGE_ACCOUNT>


     <CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
     <CIME_OUTPUT_ROOT>/scratch/$USER/cesm/output</CIME_OUTPUT_ROOT>
     <DIN_LOC_ROOT>$ENV{CESMDATAROOT}/inputdata</DIN_LOC_ROOT>
     <DIN_LOC_ROOT>/scratch/$USER/cesm/inputdata</DIN_LOC_ROOT>
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>
    <DIN_LOC_ROOT_CLMFORC>${DIN_LOC_ROOT}/atm/datm7</DIN_LOC_ROOT_CLMFORC>
 
     <DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/case</DOUT_S_ROOT>
    <GMAKE>make</GMAKE>
    <GMAKE_J>8</GMAKE_J>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <BATCH_SYSTEM>slurm</BATCH_SYSTEM>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
     <SUPPORTED_BY>support@tech.alliancecan.ca</SUPPORTED_BY>
Line 259: Line 405:
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
     <PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>


     <mpirun mpilib="default">
     <mpirun mpilib="intelmpi">
       <executable>srun</executable>
       <executable>mpirun</executable>
      <arguments>
        <arg name="anum_tasks"> -np [[:Template:Total tasks]]</arg>
      </arguments>
     </mpirun>
     </mpirun>
    <module_system type="module" allow_error="true">
      <init_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/perl</init_path>
      <init_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/env_modules_python.py</init_path>
      <init_path lang="csh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/csh</init_path>
      <init_path lang="sh">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/sh</init_path>
      <cmd_path lang="perl">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod perl</cmd_path>
      <cmd_path lang="python">/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python</cmd_path>
      <cmd_path lang="csh">module</cmd_path>
      <cmd_path lang="sh">module</cmd_path>
      <modules>
      <command name="purge"/>
<command name="load">StdEnv/2023</command>
      </modules>
      <modules compiler="intel">
<command name="load">intel/2023.2.1</command>
<command name="load">git-annex/10.20231129</command>
<command name="load">cmake/3.27.7</command>
      </modules>
      <modules mpilib="intelmpi">
        <command name="load">openmpi/4.1.5</command>
        <command name="load">hdf5-mpi/1.14.2</command>
        <command name="load">netcdf-c++4-mpi/4.3.1</command>
        <command name="load">netcdf-fortran-mpi/4.6.1</command>
        <command name="load">netcdf-mpi/4.9.2</command>
<command name="load">xml-libxml/2.0208</command>
<command name="load">flexiblas/3.3.1</command>
      </modules>
    </module_system>
    <environment_variables>
            <env name="NETCDF_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/pnetcdf/1.12.3</env>
            <env name="NETCDF_FORTRAN_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-fortran-mpi/4.6.1/</env>
            <env name="NETCDF_C_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v4/MPI/intel2023/openmpi4/netcdf-c++4-mpi/4.3.1/</env>
            <env name="NETLIB_LAPACK_PATH">/cvmfs/soft.computecanada.ca/easybuild/software/2023/x86-64-v3/Core/imkl/2023.2.0/mkl/2023.2.0/</env>
    <env name="OMP_STACKSIZE">256M</env>
            <env name="I_MPI_CC">icc</env>
            <env name="I_MPI_FC">ifort</env>
            <env name="I_MPI_F77">ifort</env>
            <env name="I_MPI_F90">ifort</env>
            <env name="I_MPI_CXX">icpc</env>
    </environment_variables>
    <resource_limits>
      <resource name="RLIMIT_STACK">300000000</resource>
    </resource_limits>
   </machine>
   </machine>


Shuber
cc_staff
147

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