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QIIME/fr: Difference between revisions
Updating to match new version of source page
(Created page with "Cette étape du build pourrait prendre plus d'une heure, mais il ne faut l'effectuer qu'une seule fois. Sauvegardez le fichier image (dans notre exemple <code>qiime2-2019.10.s...") |
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#SBATCH --account=def-someuser | #SBATCH --account=def-someuser | ||
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singularity exec -B /home -B /project -B /scratch qiime2-2019.10.sif \ | singularity exec -B /home -B /project -B /scratch qiime2-2019.10.sif \ | ||
qiime tools import \ | qiime tools import \ | ||
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--input-path /path/to/some_fastafile.fa \ | --input-path /path/to/some_fastafile.fa \ | ||
--output-path /path/to/some_output_feature.qza | --output-path /path/to/some_output_feature.qza | ||
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singularity exec -B /home -B /project -B /scratch qiime2-2019.10.sif \ | singularity exec -B /home -B /project -B /scratch qiime2-2019.10.sif \ | ||
qiime tools import \ | qiime tools import \ | ||
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--input-path /path/to/some_taxonomy_file.tax \ | --input-path /path/to/some_taxonomy_file.tax \ | ||
--output-path /path/to/some_output_ref-taxonomy.qza | --output-path /path/to/some_output_ref-taxonomy.qza | ||
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singularity exec -B /home -B /project -B /scratch qiime2-2019.10.sif \ | singularity exec -B /home -B /project -B /scratch qiime2-2019.10.sif \ | ||
qiime feature-classifier fit-classifier-naive-bayes \ | qiime feature-classifier fit-classifier-naive-bayes \ | ||
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--o-classifier /path/to/some_output_classifier.qza | --o-classifier /path/to/some_output_classifier.qza | ||
</pre> | </pre> | ||
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Note that it is important to [[Singularity#Bind_mounts|bind]] the folders you want to work with to the execution of the container. For more information about Singularity, you can watch the recorded [https://www.youtube.com/watch?v=kYb0aXS5DEE Singularity webinar]. | Note that it is important to [[Singularity#Bind_mounts|bind]] the folders you want to work with to the execution of the container. For more information about Singularity, you can watch the recorded [https://www.youtube.com/watch?v=kYb0aXS5DEE Singularity webinar]. | ||