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FreeSurfer: Difference between revisions
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Select a version (6.0.0 or newer) in the [https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/ download repository] and download the corresponding <code>freesurfer-Linux*vX.Y.Z.tar.gz</code> archive on your favorite cluster. | Select a version (6.0.0 or newer) in the [https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/ download repository] and download the corresponding <code>freesurfer-Linux*vX.Y.Z.tar.gz</code> archive on your favorite cluster. | ||
==Installation in your | ==Installation in your /home with EasyBuild== <!--T:6--> | ||
The following procedure will install FreeSurfer 6.0.0 in <code>/home/$USER/.local/easybuild/software/2017/Core/freesurfer/6.0.0/</code>. The installation of FreeSurfer requires some memory and due to the restrictions of memory stack size on the login nodes on Compute Canada clusters, the installation may fail because of the memory. To overcome this issue, you may need to use an [[Running_jobs#Interactive_jobs|interactive job]] by asking for enough memory (8 GB or so) to install the code. | The following procedure will install FreeSurfer 6.0.0 in <code>/home/$USER/.local/easybuild/software/2017/Core/freesurfer/6.0.0/</code>. The installation of FreeSurfer requires some memory and due to the restrictions of memory stack size on the login nodes on Compute Canada clusters, the installation may fail because of the memory. To overcome this issue, you may need to use an [[Running_jobs#Interactive_jobs|interactive job]] by asking for enough memory (8 GB or so) to install the code. | ||