GATK: Difference between revisions

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 ==Frequently asked questions == <!--T:23-->
 ===How do I add a read group (RG) tag in my bam file? ===
-Assuming that you want to add the read group called '''tag''' to the input file called '''bam''', you can use the GATK/PICARD command [https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrReplaceReadGroups-Picard- AddOrReplaceReadGroups]:
+Assuming that you want to add a read group called '''tag''' to the file called '''input.bam''', you can use the GATK/PICARD command [https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrReplaceReadGroups-Picard- AddOrReplaceReadGroups]:
 <pre>
 gatk  AddOrReplaceReadGroups \