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Galaxy: Difference between revisions
→Galaxy on Cedar
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* config: It contains all require configure files to setup and optimize Galaxy server. Bellow we will explain some basis concepts of some of configure files that need to be setup in order to be compatible with our HPC environment, however, we are not able to cover all concepts as they beyond of this topic. | * config: It contains all require configure files to setup and optimize Galaxy server. Bellow we will explain some basis concepts of some of configure files that need to be setup in order to be compatible with our HPC environment, however, we are not able to cover all concepts as they beyond of this topic. | ||
* galaxy: It contains the core Galaxy package which is written mostly in python. | * galaxy: It contains the core Galaxy package which is written mostly in python. | ||
* logs: Contains | * logs: Contains two files, <code>galaxy.log</code> and <code>server.log</code>. All massages during startup or shutdown of the server would be written in <code>server.log</code> while all massages during the run would be written in <code>galaxy.log</code>. | ||
* plugins: Contains all plugins. In original galaxy package this directory is located within <code>galaxy</code> directory. | * plugins: Contains all plugins. In original galaxy package this directory is located within <code>galaxy</code> directory. | ||
* tmp: Contains all temporary files that galaxy needs for compiling and installing tool sheds. | * tmp: Contains all temporary files that galaxy needs for compiling and installing tool sheds. | ||