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Galaxy: Difference between revisions
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* config: It contains all require configure files to setup and optimize Galaxy server. Bellow we will explain some basis concepts of some of configure files that need to be setup in order to be compatible with our HPC environment, however, we are not able to cover all concepts as they beyond of this topic. | * config: It contains all require configure files to setup and optimize Galaxy server. Bellow we will explain some basis concepts of some of configure files that need to be setup in order to be compatible with our HPC environment, however, we are not able to cover all concepts as they beyond of this topic. | ||
* galaxy: It contains the core python | * galaxy: It contains the core Galaxy package which is written mostly in python. | ||
* logs: Contains all log files during server Stop/Start/Run process as well as. The most important file in this directory is <code>galaxy.log</code> that is widely used to diagnose issues during Galaxy run. | * logs: Contains all log files during server Stop/Start/Run process as well as. The most important file in this directory is <code>galaxy.log</code> that is widely used to diagnose issues during Galaxy run. | ||
* plugins: Contains all plugins. In original galaxy package this directory is located within <code>galaxy</code> directory. | * plugins: Contains all plugins. In original galaxy package this directory is located within <code>galaxy</code> directory. | ||