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MetaPhlAn: Difference between revisions
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{{Command|prompt=(ENV) [name@server ~]|pip install --no-index metaphlan}} | {{Command|prompt=(ENV) [name@server ~]|pip install --no-index metaphlan}} | ||
In order to be used correctly | ==Initialization== | ||
In order to be used correctly, MetaPhlAn needs to download certain databases from a remote server and then compute indices derived from the components of these databases. On those clusters which do not permit Internet access from the compute nodes, these databases will have to be downloaded using a login node, | |||
{{Command|prompt=(ENV) [name@server ~]|metaphlan --install --bowtie2db $HOME/projects/def-jdoe/$USER}} | |||