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Samtools: Difference between revisions
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Note: This page does not cover all features of SAMtools. Please refer to [http://www.htslib.org/doc/samtools.html/ Samtools] for the complete list of all subtools. | Note: This page does not cover all features of SAMtools. Please refer to [http://www.htslib.org/doc/samtools.html/ Samtools] for the complete list of all subtools. | ||
== Availability and Loading Module == <!--T:2--> | |||
To query all available version of SAMtools in our clusters: | |||
{{Command|module spider samtools}} | |||
You can load the version of your choice using <tt>module load</tt>. For example, to load samtools 1.12 use command | |||
{{Command|module load samtools/1.12}} | |||
To load the default version of samtools use command | |||
{{Command|module load samtools}} | |||
{{Command|samtools | |||
Program: samtools (Tools for alignments in the SAM format) | |||
Version: 1.12 (using htslib 1.12) | |||
Usage: samtools <command> [options]}} | |||