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Samtools: Difference between revisions
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→Processing multiple files with multithreading and/or GNU parallel
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The above script will execute view and sort on four sam files concurrently. If you have more input files, modify the number of cores and <tt>-j</tt>. Please note that if you ignore the -j flag your job will run on all available cpu cores. | The above script will execute <tt>view</tt> and <tt>sort</tt> on four sam files concurrently. If you have more input files, modify the number of cores and <tt>-j</tt>. Please note that if you ignore the -j flag your job will run on all available cpu cores. | ||