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Parasail: Difference between revisions
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{{Command|module load parasail/2.6.2}} | {{Command|module load parasail/2.6.2}} | ||
== parasail_aligner Example == | == parasail_aligner Example == <!--T:6--> | ||
When using the binary <tt>parasail_aligner</tt> it is important to set the number of threads according to the number of cores allocated in our job. We can set it with | When using the binary <tt>parasail_aligner</tt> it is important to set the number of threads according to the number of cores allocated in our job. We can set it with | ||
<syntaxhighlight lang="bash"> | <syntaxhighlight lang="bash"> | ||
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</syntaxhighlight> | </syntaxhighlight> | ||
== Python extension == | == Python extension == <!--T:7--> | ||
The module contains bindings for multiple Python versions. | The module contains bindings for multiple Python versions. | ||
To discover which are the compatible Python versions, run | To discover which are the compatible Python versions, run | ||
{{Command|module spider parasail/1.3.4}} | {{Command|module spider parasail/1.3.4}} | ||
=== Usage === | === Usage === <!--T:8--> | ||
1. Load the required modules. | 1. Load the required modules. | ||
{{Command|module load parasail/2.6.2 python/3.11 scipy-stack/2023b}} | {{Command|module load parasail/2.6.2 python/3.11 scipy-stack/2023b}} | ||
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}} | }} | ||
==== Available Python packages ==== | ==== Available Python packages ==== <!--T:27--> | ||
Other Python packages that depend on parasail will have their requirement satisfied with the module loaded: | Other Python packages that depend on parasail will have their requirement satisfied with the module loaded: | ||
{{Command | {{Command | ||