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Parasail/en: Difference between revisions
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{{Command|module load parasail/2.6.2}} | {{Command|module load parasail/2.6.2}} | ||
== parasail_aligner Example == | == parasail_aligner Example == | ||
When using the binary <tt>parasail_aligner</tt> it is important to set the number of threads according to the number of cores allocated in our job. We can set it with | When using the binary <tt>parasail_aligner</tt> it is important to set the number of threads according to the number of cores allocated in our job. We can set it with | ||
<syntaxhighlight lang="bash"> | <syntaxhighlight lang="bash"> | ||
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</syntaxhighlight> | </syntaxhighlight> | ||
== Python extension == | == Python extension == | ||
The module contains bindings for multiple Python versions. | The module contains bindings for multiple Python versions. | ||
To discover which are the compatible Python versions, run | To discover which are the compatible Python versions, run | ||
{{Command|module spider parasail/1.3.4}} | {{Command|module spider parasail/1.3.4}} | ||
=== Usage === | === Usage === | ||
1. Load the required modules. | 1. Load the required modules. | ||
{{Command|module load parasail/2.6.2 python/3.11 scipy-stack/2023b}} | {{Command|module load parasail/2.6.2 python/3.11 scipy-stack/2023b}} | ||
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<tab name="StdEnv/2020"> | <tab name="StdEnv/2020"> | ||
2.1. Identify available wheels first : | 2.1. Identify available wheels first : | ||
{{Command|avail_wheel parasail}} | {{Command | ||
|avail_wheel parasail | |||
|result= | |||
name version python arch | |||
-------- --------- -------- ------- | |||
parasail 1.2.4 py2,py3 generic | |||
}} | |||
Then install the desired version in your virtual environment: | Then install the desired version in your virtual environment: | ||
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{{Command | {{Command | ||
|sbatch submit-parasail.sh | |sbatch submit-parasail.sh | ||
}} | }} | ||
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}} | }} | ||
==== Available Python packages ==== | ==== Available Python packages ==== | ||
Other Python packages that depend on parasail will have their requirement satisfied with the module loaded: | Other Python packages that depend on parasail will have their requirement satisfied with the module loaded: | ||
{{Command | {{Command | ||