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= External documentation for popular visualization packages = | = External documentation for popular visualization packages = <!--T:1--> | ||
=== ParaView === | === ParaView === <!--T:2--> | ||
[http://www.paraview.org ParaView] is a general-purpose 3D scientific visualization tool. It is open source and compiles on all popular platforms (Linux, Windows, Mac), understands a large number of input file formats, provides multiple rendering modes, supports Python scripting, and can scale up to tens of thousands of processors for rendering of very large datasets. | [http://www.paraview.org ParaView] is a general-purpose 3D scientific visualization tool. It is open source and compiles on all popular platforms (Linux, Windows, Mac), understands a large number of input file formats, provides multiple rendering modes, supports Python scripting, and can scale up to tens of thousands of processors for rendering of very large datasets. | ||
* [http://www.paraview.org/documentation ParaView official documentation] | * [http://www.paraview.org/documentation ParaView official documentation] | ||
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* [http://www.paraview.org/Wiki/ParaView/Python_Scripting ParaView Python scripting] | * [http://www.paraview.org/Wiki/ParaView/Python_Scripting ParaView Python scripting] | ||
=== VisIt === | === VisIt === <!--T:3--> | ||
Similar to ParaView, [https://wci.llnl.gov/simulation/computer-codes/visit/ VisIt] is an open-source, general-purpose 3D scientific data analysis and visualization tool that scales from interactive analysis on laptops to very large HPC projects on tens of thousands of processors. | Similar to ParaView, [https://wci.llnl.gov/simulation/computer-codes/visit/ VisIt] is an open-source, general-purpose 3D scientific data analysis and visualization tool that scales from interactive analysis on laptops to very large HPC projects on tens of thousands of processors. | ||
* [https://wci.llnl.gov/simulation/computer-codes/visit/manuals VisIt manuals] | * [https://wci.llnl.gov/simulation/computer-codes/visit/manuals VisIt manuals] | ||
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* [http://www.visitusers.org/index.php?title=VisIt_Tutorial VisIt tutorials] along with [http://www.visitusers.org/index.php?title=Tutorial_Data sample datasets] | * [http://www.visitusers.org/index.php?title=VisIt_Tutorial VisIt tutorials] along with [http://www.visitusers.org/index.php?title=Tutorial_Data sample datasets] | ||
=== VMD === | === VMD === <!--T:4--> | ||
[http://www.ks.uiuc.edu/Research/vmd VMD] is an open-source molecular visualization program for displaying, animating, and analyzing large biomolecular systems in 3D. It supports scripting in Tcl and Python and runs on a variety of platforms (MacOS X, Linux, Windows). It reads many molecular data formats using an extensible plugin system and supports a number of different molecular representations. | [http://www.ks.uiuc.edu/Research/vmd VMD] is an open-source molecular visualization program for displaying, animating, and analyzing large biomolecular systems in 3D. It supports scripting in Tcl and Python and runs on a variety of platforms (MacOS X, Linux, Windows). It reads many molecular data formats using an extensible plugin system and supports a number of different molecular representations. | ||
* [http://www.ks.uiuc.edu/Research/vmd/current/ug VMD User's Guide] | * [http://www.ks.uiuc.edu/Research/vmd/current/ug VMD User's Guide] | ||
=== VTK === | === VTK === <!--T:5--> | ||
The Visualization Toolkit (VTK) is an open-source package for 3D computer graphics, image processing, and visualization. It consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK is the base of many excellent visualization packages including ParaView and VisIt. | The Visualization Toolkit (VTK) is an open-source package for 3D computer graphics, image processing, and visualization. It consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK is the base of many excellent visualization packages including ParaView and VisIt. | ||
* [https://itk.org/Wiki/VTK/Tutorials VTK tutorials] | * [https://itk.org/Wiki/VTK/Tutorials VTK tutorials] | ||
= Visualization on new Compute Canada systems = | = Visualization on new Compute Canada systems = <!--T:6--> | ||
This section will be updated as the new systems start coming online beginning in the fall 2016. | This section will be updated as the new systems start coming online beginning in the fall 2016. | ||
= Upcoming visualization events = | = Upcoming visualization events = <!--T:7--> | ||
* October 2016 visualization challenge - details will be posted in September 2016 | * October 2016 visualization challenge - details will be posted in September 2016 | ||
* fall visualization webinars: September, November | * fall visualization webinars: September, November | ||
* fall visualization workshops: UBC, UVic, SFU | * fall visualization workshops: UBC, UVic, SFU | ||
= Compute Canada visualization presentation materials = | = Compute Canada visualization presentation materials = <!--T:8--> | ||
=== Full- or half-day workshops === | === Full- or half-day workshops === <!--T:9--> | ||
* [https://docs.computecanada.ca/mediawiki/images/5/5d/Visit201606.pdf VisIt workshop slides] from HPCS'2016 in Edmonton by <i>Marcelo Ponce</i> and <i>Alex Razoumov</i> | * [https://docs.computecanada.ca/mediawiki/images/5/5d/Visit201606.pdf VisIt workshop slides] from HPCS'2016 in Edmonton by <i>Marcelo Ponce</i> and <i>Alex Razoumov</i> | ||
* [https://docs.computecanada.ca/mediawiki/images/d/d0/Paraview201602.pdf ParaView workshop slides] from UBC Okanagan by <i>Alex Razoumov</i> | * [https://docs.computecanada.ca/mediawiki/images/d/d0/Paraview201602.pdf ParaView workshop slides] from UBC Okanagan by <i>Alex Razoumov</i> | ||
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* [https://support.scinet.utoronto.ca/~mponce/ss2016/ss2016_visualization-II.pdf Brief overview of ParaView & VisIt] slides by <i>Marcelo Ponce</i> (SciNet/UofT) from Ontario HPC Summer School 2016 | * [https://support.scinet.utoronto.ca/~mponce/ss2016/ss2016_visualization-II.pdf Brief overview of ParaView & VisIt] slides by <i>Marcelo Ponce</i> (SciNet/UofT) from Ontario HPC Summer School 2016 | ||
=== Webinars and other short presentations === | === Webinars and other short presentations === <!--T:10--> | ||
* [https://docs.computecanada.ca/mediawiki/images/5/5f/Batch201503.pdf Batch visualization webinar slides] from March 2015 by <i>Alex Razoumov</i> | * [https://docs.computecanada.ca/mediawiki/images/5/5f/Batch201503.pdf Batch visualization webinar slides] from March 2015 by <i>Alex Razoumov</i> | ||
* [https://docs.computecanada.ca/mediawiki/images/f/fc/Gephi201603.pdf Gephi webinar notes] from March 2016 by <i>Alex Razoumov</i> | * [https://docs.computecanada.ca/mediawiki/images/f/fc/Gephi201603.pdf Gephi webinar notes] from March 2016 by <i>Alex Razoumov</i> | ||
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* [https://wiki.scinet.utoronto.ca/wiki/images/9/9c/Tkinter.pdf Introduction to GUI Programming with Tkinter], from Sept.2014 by <i>Erik Spence</i> (SciNet/UofT) | * [https://wiki.scinet.utoronto.ca/wiki/images/9/9c/Tkinter.pdf Introduction to GUI Programming with Tkinter], from Sept.2014 by <i>Erik Spence</i> (SciNet/UofT) | ||
= Tips and tricks = | = Tips and tricks = <!--T:11--> | ||
= Regional visualization pages = | = Regional visualization pages = <!--T:12--> | ||
== [http://www.westgrid.ca WestGrid] == | == [http://www.westgrid.ca WestGrid] == | ||
* [https://www.westgrid.ca/support/visualization/vis_quickstart visualization quickstart guide] | * [https://www.westgrid.ca/support/visualization/vis_quickstart visualization quickstart guide] | ||
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* [https://www.westgrid.ca/support/visualization/batch_rendering batch rendering] | * [https://www.westgrid.ca/support/visualization/batch_rendering batch rendering] | ||
== [http://www.scinet.utoronto.ca SciNet, HPC at the University of Toronto] == | == [http://www.scinet.utoronto.ca SciNet, HPC at the University of Toronto] == <!--T:13--> | ||
* [https://wiki.scinet.utoronto.ca/wiki/index.php/Software_and_Libraries#anchor_viz visualization software] | * [https://wiki.scinet.utoronto.ca/wiki/index.php/Software_and_Libraries#anchor_viz visualization software] | ||
* [https://wiki.scinet.utoronto.ca/wiki/index.php/VNC VNC] | * [https://wiki.scinet.utoronto.ca/wiki/index.php/VNC VNC] | ||
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* [https://wiki.scinet.utoronto.ca/wiki/index.php/Using_Paraview using ParaView] | * [https://wiki.scinet.utoronto.ca/wiki/index.php/Using_Paraview using ParaView] | ||
= Visualization gallery = | = Visualization gallery = <!--T:14--> | ||
You can find a gallery of visualizations based on models run on Compute Canada systems in the [https://www.computecanada.ca/research-portal/national-services/visualization visualization gallery]. | You can find a gallery of visualizations based on models run on Compute Canada systems in the [https://www.computecanada.ca/research-portal/national-services/visualization visualization gallery]. | ||
= How to get visualization help = | = How to get visualization help = <!--T:15--> | ||
You can contact us via [mailto:vis-support@computecanada.ca email]. | You can contact us via [mailto:vis-support@computecanada.ca email]. | ||
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