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* the directory that contains files and also all top directories should be readable by the group, e.g., the group mode of the group directories should have SGID bit (Set Group ID up on execution) with small "s" (not capital "S"). | * the directory that contains files and also all top directories should be readable by the group, e.g., the group mode of the group directories should have SGID bit (Set Group ID up on execution) with small "s" (not capital "S"). | ||
* make sure that your file's group in project directory is set to your group membership and not your username. | * make sure that your file's group in project directory is set to your group membership and not your username. | ||
* Edit your conf file to specify the path to the bam file. Here is an example | |||
[example_bam:database] | |||
db_adaptor = Bio::DB::Sam | |||
db_args = -bam /project/GROUPID/USERNAME/gbrowse_bam_files/example_file.bam | |||
search options = default | |||
===Setup Database=== | ===Setup Database=== | ||