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addonmanager is now called packagemanager
(updated script to beast/2.5.1) |
(addonmanager is now called packagemanager) |
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| Line 19: | Line 19: | ||
<!--T:7--> | <!--T:7--> | ||
BEAST has been installed without any add-ons. You can use the <code> | BEAST has been installed without any packages (add-ons). You can use the <code>packagemanager</code>-command (for BEAST v2.5.1 and newer; <code>addonmanager</code> for BEAST 2.4.0) to install the desired packages within your home-directory. | ||
</translate> | </translate> | ||
<tabs> | |||
<tab name="Beast ≤ 2.4.x"> | |||
$ module load beast | $ module load beast | ||
$ addonmanager -list | $ addonmanager -list | ||
| Line 44: | Line 46: | ||
SNAPP | 1.3.0 | 1.3.0 | | SNP and AFLP Phylogenies | SNAPP | 1.3.0 | 1.3.0 | | SNP and AFLP Phylogenies | ||
[...] | [...] | ||
</tab> | |||
<tab name="Beast ≥ 2.5.x" > | |||
$ packagemanager -list | |||
Name | Installed | Latest | Dependencies | Description | |||
| Version | Version | | | |||
------------------------------------------------------------------- | |||
BEAST | 2.5.1 | 2.5.0 | | BEAST core | |||
------------------------------------------------------------------- | |||
bacter | NA | 2.2.0 | | Bacterial A[...] | |||
BADTRIP | NA | 1.0.0 | | Infer trans[...] | |||
[...] | |||
SNAPP | NA | 1.4.1 | | SNP and AFL[...] | |||
[...] | |||
TreeStat2 | NA | 0.0.2 | | Utility for[...] | |||
$ packagemanager -add SNAPP | |||
Package SNAPP is installed in ~/.beast/2.5/SNAPP. | |||
$ packagemanager -list | |||
Name | Installed | Latest | Dependencies | Description | |||
| Version | Version | | | |||
------------------------------------------------------------------- | |||
BEAST | 2.5.1 | 2.5.0 | | BEAST core | |||
------------------------------------------------------------------- | |||
bacter | NA | 2.2.0 | | Bacterial A[...] | |||
BADTRIP | NA | 1.0.0 | | Infer trans[...] | |||
[...] | |||
SNAPP | 1.4.1 | 1.4.1 | | SNP and AFL[...] | |||
[...] | |||
TreeStat2 | NA | 0.0.2 | | Utility for[...] | |||
</tab> | |||
</tabs> | |||
<translate> | <translate> | ||
<!--T:8--> | <!--T:8--> | ||