41,536
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(Created page with "{| class="wikitable" style="text-align: left;" |+ <!-- caption --> |- ! name !! version |- | absl_py || 0.2.2, 0.2.0 |...") |
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! name !! version | ! name !! version | ||
|- | |- | ||
| absl_py || 0.2.2, 0.2.0 | | absl_py || 0.5.0, 0.2.2, 0.2.0 | ||
|- | |- | ||
| affine || 2.2.1, 2.1.0 | | affine || 2.2.1, 2.1.0 | ||
|- | |||
| aiozmq || 0.7.1 | |||
|- | |- | ||
| alabaster || 0.7.11, 0.7.10 | | alabaster || 0.7.11, 0.7.10 | ||
|- | |- | ||
| anvio || 5.1 | | anvio || 5.1 | ||
|- | |||
| anytree || 2.4.3 | |||
|- | |- | ||
| appdirs || 1.4.3, 1.4.0 | | appdirs || 1.4.3, 1.4.0 | ||
Line 17: | Line 21: | ||
|- | |- | ||
| arff || 0.9 | | arff || 0.9 | ||
|- | |||
| argh || 0.26.2 | |||
|- | |- | ||
| asciitree || 0.3.3 | | asciitree || 0.3.3 | ||
|- | |||
| ase || 3.16.2 | |||
|- | |- | ||
| asn1crypto || 0.24.0, 0.23.0 | | asn1crypto || 0.24.0, 0.23.0 | ||
|- | |- | ||
| astor || 0.7.1, 0.6.2 | | astor || 0.7.1, 0.6.2 | ||
|- | |||
| astropy || 3.0.5 | |||
|- | |||
| atari_py || 0.1.6 | |||
|- | |- | ||
| atomicwrites || 1.2.1, 1.1.5 | | atomicwrites || 1.2.1, 1.1.5 | ||
|- | |||
| aTRAM || 2.0 | |||
|- | |- | ||
| attrs || 18.2.0, 18.1.0, 17.4.0, 17.3.0 | | attrs || 18.2.0, 18.1.0, 17.4.0, 17.3.0 | ||
Line 73: | Line 87: | ||
|- | |- | ||
| Bottleneck || 1.2.1 | | Bottleneck || 1.2.1 | ||
|- | |||
| Box2D_kengz || 2.3.3 | |||
|- | |- | ||
| breathe || 4.9.1, 4.7.2 | | breathe || 4.9.1, 4.7.2 | ||
|- | |- | ||
| bunch || 1.0.1 | | bunch || 1.0.1 | ||
|- | |||
| BUSCO || 3.0.2 | |||
|- | |- | ||
| bx_python || 0.8.1 | | bx_python || 0.8.1 | ||
Line 82: | Line 100: | ||
| bz2file || 0.98 | | bz2file || 0.98 | ||
|- | |- | ||
| certifi || 2018.8.24, 2018.4.16, 2018.1.18, 2017.11.5, 2017.7.27.1, 2017.1.23 | | cached_property || 1.5.1 | ||
|- | |||
| certifi || 2018.10.15, 2018.8.24, 2018.4.16, 2018.1.18, 2017.11.5, 2017.7.27.1, 2017.1.23 | |||
|- | |- | ||
| cffi || 1.11.5 | | cffi || 1.11.5 | ||
|- | |||
| cgen || 2017.1 | |||
|- | |||
| chainer || 4.5.0 | |||
|- | |||
| chainermn || 1.3.0 | |||
|- | |- | ||
| chardet || 3.0.4 | | chardet || 3.0.4 | ||
Line 93: | Line 119: | ||
|- | |- | ||
| click || 6.7 | | click || 6.7 | ||
|- | |||
| Click || 7.0 | |||
|- | |- | ||
| cloudpickle || 0.5.3, 0.5.2 | | cloudpickle || 0.5.3, 0.5.2 | ||
|- | |||
| codecov || 2.0.15 | |||
|- | |||
| codepy || 2017.2.2 | |||
|- | |- | ||
| CoffeeScript || 2.0.3 | | CoffeeScript || 2.0.3 | ||
Line 103: | Line 135: | ||
|- | |- | ||
| configparser || 3.5.0 | | configparser || 3.5.0 | ||
|- | |||
| contextlib2 || 0.5.5 | |||
|- | |- | ||
| cookies || 2.2.1 | | cookies || 2.2.1 | ||
Line 110: | Line 144: | ||
| cryptography || 2.3 | | cryptography || 2.3 | ||
|- | |- | ||
| cupy || 4.3.0 | | cupy || 4.5.0, 4.3.0 | ||
|- | |||
| cutadapt || 1.18 | |||
|- | |- | ||
| CVXcanon || 0.1.1 | | CVXcanon || 0.1.1 | ||
|- | |- | ||
| cvxopt || 1.2.0 | | cvxopt || 1.2.2, 1.2.1, 1.2.0 | ||
|- | |- | ||
| cvxpy || 0.4.11 | | cvxpy || 0.4.11 | ||
Line 120: | Line 156: | ||
| cycler || 0.10.0 | | cycler || 0.10.0 | ||
|- | |- | ||
| | | cymem || 2.0.2 | ||
|- | |- | ||
| dask || 0.18.1, 0.17.1 | | Cython || 0.29, 0.28.5, 0.28.4 | ||
|- | |||
| dask || 0.19.4, 0.19.3, 0.18.1, 0.17.1 | |||
|- | |- | ||
| datreant.core || 0.7.1 | | datreant.core || 0.7.1 | ||
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|- | |- | ||
| decorator || 4.3.0, 4.2.1, 4.1.2, 4.1.1, 4.0.11 | | decorator || 4.3.0, 4.2.1, 4.1.2, 4.1.1, 4.0.11 | ||
|- | |||
| deepchem || 2.1.1.dev353 | |||
|- | |- | ||
| DeepMind_Lab || 1.0 | | DeepMind_Lab || 1.0 | ||
|- | |||
| deprecation || 2.0.6 | |||
|- | |||
| devito || 3.3 | |||
|- | |- | ||
| dill || 0.2.8.2, 0.2.7.1 | | dill || 0.2.8.2, 0.2.7.1 | ||
Line 161: | Line 205: | ||
|- | |- | ||
| ete3 || 3.1.1 | | ete3 || 3.1.1 | ||
|- | |||
| EukRep || 0.6.5 | |||
|- | |||
| fast5_research || 1.2.8 | |||
|- | |- | ||
| fastcache || 1.0.2 | | fastcache || 1.0.2 | ||
|- | |- | ||
| fastrlock || 0.3 | | fastrlock || 0.3 | ||
|- | |||
| filelock || 3.0.9 | |||
|- | |||
| flake8 || 3.6.0 | |||
|- | |- | ||
| Flask || 1.0.2, 0.12.2 | | Flask || 1.0.2, 0.12.2 | ||
|- | |||
| frozendict || 1.2 | |||
|- | |- | ||
| funcsigs || 1.0.2 | | funcsigs || 1.0.2 | ||
Line 175: | Line 229: | ||
|- | |- | ||
| gast || 0.2.0 | | gast || 0.2.0 | ||
|- | |||
| gemBS || 3.2.1 | |||
|- | |- | ||
| geos || 0.2.1 | | geos || 0.2.1 | ||
Line 182: | Line 238: | ||
| GridDataFormats || 0.4.0 | | GridDataFormats || 0.4.0 | ||
|- | |- | ||
| grpcio || 1.13.0 | | grpcio || 1.16.1, 1.16.0, 1.15.0, 1.13.0 | ||
|- | |- | ||
| gsd || 1.5.2 | | gsd || 1.5.2 | ||
Line 189: | Line 245: | ||
|- | |- | ||
| html5lib || 1.0.1, 0.999999999, 0.9999999 | | html5lib || 1.0.1, 0.999999999, 0.9999999 | ||
|- | |||
| httpie || 0.9.9 | |||
|- | |- | ||
| hypothesis || 3.69.11, 3.66.1, 3.56.0, 2.0.0 | | hypothesis || 3.69.11, 3.66.1, 3.56.0, 2.0.0 | ||
Line 195: | Line 253: | ||
|- | |- | ||
| image || 1.5.24, 1.5.12 | | image || 1.5.24, 1.5.12 | ||
|- | |||
| imageio || 2.4.1 | |||
|- | |- | ||
| imagesize || 1.0.0, 0.7.1 | | imagesize || 1.0.0, 0.7.1 | ||
|- | |||
| inflect || 1.0.1 | |||
|- | |- | ||
| ipaddress || 1.0.22 | | ipaddress || 1.0.22 | ||
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|- | |- | ||
| isoweek || 1.3.3 | | isoweek || 1.3.3 | ||
|- | |||
| itsdangerous || 1.1.0 | |||
|- | |- | ||
| jedi || 0.12.1, 0.11.1, 0.10.2 | | jedi || 0.12.1, 0.11.1, 0.10.2 | ||
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| jmespath || 0.9.3 | | jmespath || 0.9.3 | ||
|- | |- | ||
| joblib || 0.12.0, 0.11 | | joblib || 0.12.5, 0.12.0, 0.11 | ||
|- | |- | ||
| jsondiff || 1.1.2, 1.1.1 | | jsondiff || 1.1.2, 1.1.1 | ||
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| Keras || 2.2.2, 2.2.0, 2.1.2, 2.0.8 | | Keras || 2.2.2, 2.2.0, 2.1.2, 2.0.8 | ||
|- | |- | ||
| Keras_Applications || 1.0.4, 1.0.2 | | Keras_Applications || 1.0.6, 1.0.4, 1.0.2 | ||
|- | |- | ||
| Keras_Preprocessing || 1.0.2, 1.0.1 | | Keras_Preprocessing || 1.0.5, 1.0.2, 1.0.1 | ||
|- | |- | ||
| keras_vis || 0.4.1 | | keras_vis || 0.4.1 | ||
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| kneaddata || 0.6.1 | | kneaddata || 0.6.1 | ||
|- | |- | ||
| llvmlite || 0.24.0, 0.16.0 | | kPAL || 2.1.1 | ||
|- | |||
| llvmlite || 0.25.0, 0.24.0, 0.16.0 | |||
|- | |- | ||
| lockfile || 0.12.2 | | lockfile || 0.12.2 | ||
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|- | |- | ||
| Mako || 1.0.7 | | Mako || 1.0.7 | ||
|- | |||
| mappy || 2.13 | |||
|- | |- | ||
| Markdown || 2.6.11, 2.6.9 | | Markdown || 2.6.11, 2.6.9 | ||
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| MarkupSafe || 1.0 | | MarkupSafe || 1.0 | ||
|- | |- | ||
| matplotlib || 2.2.3, 2.2.2 | | matplotlib || 3.0.1, 3.0.0, 2.2.3, 2.2.2 | ||
|- | |||
| mccabe || 0.6.1 | |||
|- | |- | ||
| MDAnalysis || 0.18.0 | | MDAnalysis || 0.18.0 | ||
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|- | |- | ||
| mdsynthesis || 0.6.1 | | mdsynthesis || 0.6.1 | ||
|- | |||
| medaka || 0.3.0 | |||
|- | |- | ||
| memory_profiler || 0.52.0 | | memory_profiler || 0.52.0 | ||
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|- | |- | ||
| mpmath || 1.0.0 | | mpmath || 1.0.0 | ||
|- | |||
| msgpack || 0.5.6 | |||
|- | |- | ||
| msgpack_numpy || 0.4.1 | | msgpack_numpy || 0.4.1 | ||
|- | |||
| msprime || 0.6.1 | |||
|- | |||
| multidict || 4.4.2 | |||
|- | |- | ||
| multiprocess || 0.70.6.1 | | multiprocess || 0.70.6.1 | ||
|- | |||
| murmurhash || 0.28.0 | |||
|- | |- | ||
| mxnet || 0.11.0 | | mxnet || 0.11.0 | ||
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|- | |- | ||
| nbformat || 4.4.0 | | nbformat || 4.4.0 | ||
|- | |||
| nbval || 0.9.1 | |||
|- | |- | ||
| netaddr || 0.7.19 | | netaddr || 0.7.19 | ||
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| netifaces || 0.10.7 | | netifaces || 0.10.7 | ||
|- | |- | ||
| networkx || 2.1, 2.0, 1.11 | | networkx || 2.2, 2.1, 2.0, 1.11 | ||
|- | |- | ||
| nibabel || 2.3.0, 2.2.1, 2.2.0 | | nibabel || 2.3.0, 2.2.1, 2.2.0 | ||
Line 332: | Line 414: | ||
| notebook || 5.6.0, 5.5.0, 5.4.0, 5.2.2 | | notebook || 5.6.0, 5.5.0, 5.4.0, 5.2.2 | ||
|- | |- | ||
| numba || 0.39.0 | | numba || 0.40.1, 0.40.0, 0.39.0 | ||
|- | |- | ||
| numexpr || 2.6.6 | | numexpr || 2.6.6 | ||
|- | |- | ||
| numpy || 1.15.0 | | numpy || 1.15.2, 1.15.0 | ||
|- | |- | ||
| olefile || 0.45.1, 0.44 | | olefile || 0.45.1, 0.44 | ||
Line 346: | Line 428: | ||
| ordereddict || 1.1 | | ordereddict || 1.1 | ||
|- | |- | ||
| packaging || 17.1, 16.8 | | packaging || 18.0, 17.1, 16.8 | ||
|- | |- | ||
| pandas || 0.23.3 | | pandas || 0.23.3 | ||
Line 361: | Line 443: | ||
|- | |- | ||
| pathlib2 || 2.3.2, 2.3.0, 2.2.1 | | pathlib2 || 2.3.2, 2.3.0, 2.2.1 | ||
|- | |||
| pathtools || 0.1.2 | |||
|- | |- | ||
| patsy || 0.5.0 | | patsy || 0.5.0 | ||
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| pickleshare || 0.7.4 | | pickleshare || 0.7.4 | ||
|- | |- | ||
| Pillow || 5.2.0 | | Pillow || 5.3.0, 5.2.0 | ||
|- | |- | ||
| plac || 0.9.6 | | plac || 0.9.6 | ||
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| plotly || 2.7.0 | | plotly || 2.7.0 | ||
|- | |- | ||
| pluggy || 0.7.1, 0.6.0 | | pluggy || 0.8.0, 0.7.1, 0.6.0 | ||
|- | |- | ||
| ply || 3.11, 3.10 | | ply || 3.11, 3.10 | ||
|- | |||
| pomoxis || 0.1.11 | |||
|- | |||
| porechop || 0.2.4 | |||
|- | |||
| preshed || 2.0.1 | |||
|- | |- | ||
| progressbar || 2.5 | | progressbar || 2.5 | ||
|- | |||
| progressbar2 || 3.38.0 | |||
|- | |||
| prokaryote || 2.4.0 | |||
|- | |- | ||
| prometheus_client || 0.3.1 | | prometheus_client || 0.3.1 | ||
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| prompt_toolkit || 2.0.3, 1.0.15 | | prompt_toolkit || 2.0.3, 1.0.15 | ||
|- | |- | ||
| protobuf || | | protobuf || 3.5.2.post1, 3.4.0 | ||
|- | |- | ||
| prov || 1.5.2, 1.5.0 | | prov || 1.5.2, 1.5.0 | ||
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| ptyprocess || 0.6.0, 0.5.2, 0.5.1 | | ptyprocess || 0.6.0, 0.5.2, 0.5.1 | ||
|- | |- | ||
| py || 1.6.0, 1.5.4, 1.5.3, 1.5.2, 1.4.34 | | py || 1.7.0, 1.6.0, 1.5.4, 1.5.3, 1.5.2, 1.4.34 | ||
|- | |||
| py_cpuinfo || 4.0.0 | |||
|- | |- | ||
| pyaml || 17.12.1 | | pyaml || 17.12.1 | ||
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|- | |- | ||
| pyasn1 || 0.4.3, 0.4.2 | | pyasn1 || 0.4.3, 0.4.2 | ||
|- | |||
| pybind11 || 2.2.4 | |||
|- | |- | ||
| pycallgraph || 1.0.1 | | pycallgraph || 1.0.1 | ||
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|- | |- | ||
| pygame || 1.9.4 | | pygame || 1.9.4 | ||
|- | |||
| pyglet || 1.3.2 | |||
|- | |- | ||
| Pygments || 2.2.0 | | Pygments || 2.2.0 | ||
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| pynast || 1.2.2 | | pynast || 1.2.2 | ||
|- | |- | ||
| pyparsing || 2.2.0, 2.1.10 | | PyOpenGL || 3.1.0 | ||
|- | |||
| pyparsing || 2.3.0, 2.2.2, 2.2.0, 2.1.10 | |||
|- | |||
| pysam || 0.15.1 | |||
|- | |- | ||
| pytest || 3.8.0, 3.6.3, 3.5.1, 3.5.0, 3.4.2, 3.3.1, 3.2.1, 3.2.0 | | pytest || 3.8.2, 3.8.0, 3.6.3, 3.5.1, 3.5.0, 3.4.2, 3.3.1, 3.2.1, 3.2.0 | ||
|- | |||
| pytest_cov || 2.6.0 | |||
|- | |||
| pytest_runner || 4.2 | |||
|- | |- | ||
| python_dateutil || 2.7.3, 2.7.2, 2.7.0, 2.6.1, 2.6.0 | | python_dateutil || 2.7.3, 2.7.2, 2.7.0, 2.6.1, 2.6.0 | ||
|- | |||
| python_utils || 2.3.0 | |||
|- | |- | ||
| pytools || 2018.5.2, 2017.4 | | pytools || 2018.5.2, 2017.4 | ||
Line 446: | Line 556: | ||
| pytz || 2018.5, 2018.4, 2018.3, 2017.3, 2017.2, 2016.10 | | pytz || 2018.5, 2018.4, 2018.3, 2017.3, 2017.2, 2016.10 | ||
|- | |- | ||
| PyWavelets || 0.5.2 | | PyWavelets || 1.0.1, 0.5.2 | ||
|- | |- | ||
| PyYAML || 3.13 | | PyYAML || 3.13 | ||
|- | |- | ||
| pyzmq || 17.1.0 | | pyzmq || 17.1.2, 17.1.0 | ||
|- | |- | ||
| qtconsole || 4.3.1 | | qtconsole || 4.3.1 | ||
|- | |||
| randomcolor || 0.4.4.5 | |||
|- | |- | ||
| rasterio || 1.0.1 | | rasterio || 1.0.1 | ||
|- | |- | ||
| ratelimiter || 1.2.0.post0 | | ratelimiter || 1.2.0.post0 | ||
|- | |||
| raven || 6.9.0 | |||
|- | |- | ||
| rdflib || 4.2.2 | | rdflib || 4.2.2 | ||
|- | |- | ||
| requests || 2.19.1, 2.18.4 | | regex || 2018.1.10 | ||
|- | |||
| requests || 2.20.0, 2.19.1, 2.18.4 | |||
|- | |- | ||
| responses || 0.9.0 | | responses || 0.9.0 | ||
Line 476: | Line 592: | ||
| scikit_cuda || 0.5.1 | | scikit_cuda || 0.5.1 | ||
|- | |- | ||
| scikit_image || 0.14.0 | | scikit_image || 0.14.1, 0.14.0 | ||
|- | |- | ||
| scikit_learn || 0.19.2 | | scikit_learn || 0.20.0, 0.19.2 | ||
|- | |- | ||
| scipy || 1.1.0 | | scipy || 1.1.0 | ||
|- | |||
| screed || 1.0 | |||
|- | |- | ||
| scs || 2.0.2 | | scs || 2.0.2 | ||
|- | |- | ||
| seaborn || 0.8.1 | | seaborn || 0.8.1 | ||
|- | |||
| semantic_version || 2.6.0 | |||
|- | |- | ||
| Send2Trash || 1.5.0 | | Send2Trash || 1.5.0 | ||
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|- | |- | ||
| Shapely || 1.6.4.post2 | | Shapely || 1.6.4.post2 | ||
|- | |||
| simdna || 0.4.2 | |||
|- | |- | ||
| simplegeneric || 0.8.1 | | simplegeneric || 0.8.1 | ||
Line 509: | Line 631: | ||
|- | |- | ||
| Sphinx || 1.7.7, 1.7.6, 1.7.5, 1.6.3 | | Sphinx || 1.7.7, 1.7.6, 1.7.5, 1.6.3 | ||
|- | |||
| sphinx_argparse || 0.2.3 | |||
|- | |- | ||
| sphinxcontrib_websupport || 1.1.0, 1.0.1 | | sphinxcontrib_websupport || 1.1.0, 1.0.1 | ||
Line 514: | Line 638: | ||
| statsmodels || 0.9.0 | | statsmodels || 0.9.0 | ||
|- | |- | ||
| subprocess32 || 3.5.2 | | storm_analysis || 2.0 | ||
|- | |||
| subprocess32 || 3.5.3, 3.5.2 | |||
|- | |||
| svgwrite || 1.1.12 | |||
|- | |- | ||
| sympy || 1.2, 1.1.1 | | sympy || 1.2, 1.1.1 | ||
Line 522: | Line 650: | ||
| tblib || 1.3.2 | | tblib || 1.3.2 | ||
|- | |- | ||
| tensorboard || 1.9.0, 1.8.0 | | tensorboard || 1.11.0, 1.9.0, 1.8.0 | ||
|- | |- | ||
| tensorflow_tensorboard || 1.5.1, 0.4.0rc3, 0.1.6 | | tensorflow_tensorboard || 1.5.1, 0.4.0rc3, 0.1.6 | ||
Line 533: | Line 661: | ||
|- | |- | ||
| Theano || 1.0.1, 0.9.0 | | Theano || 1.0.1, 0.9.0 | ||
|- | |||
| tifffile || 2018.11.6 | |||
|- | |- | ||
| toolz || 0.9.0 | | toolz || 0.9.0 | ||
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| torch_gpu || 0.4.1, 0.4.0 | | torch_gpu || 0.4.1, 0.4.0 | ||
|- | |- | ||
| torchtext || 0.2.3 | | torchaudio || 0.1 | ||
|- | |||
| torchtext || 0.3.1, 0.2.3 | |||
|- | |- | ||
| torchvision || 0.2.1, 0.2.0 | | torchvision || 0.2.1, 0.2.0 | ||
|- | |- | ||
| tornado || 5.1 | | tornado || 5.1.1, 5.1 | ||
|- | |- | ||
| tqdm || 4.24.0, 4.23.4, 4.19.5 | | tqdm || 4.24.0, 4.23.4, 4.19.5 | ||
Line 556: | Line 688: | ||
| unittest2 || 1.1.0 | | unittest2 || 1.1.0 | ||
|- | |- | ||
| urllib3 || 1.23, 1.22 | | urllib3 || 1.24, 1.23, 1.22 | ||
|- | |||
| versioneer || 0.18 | |||
|- | |- | ||
| virtualenv || 16.0.0 | | virtualenv || 16.0.0 | ||
|- | |||
| watchdog || 0.9.0 | |||
|- | |- | ||
| wcwidth || 0.1.7 | | wcwidth || 0.1.7 |