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| align="center" | [http://www.simulia.com/products/abaqus_fea.html abaqus/6.14.1] | | align="center" | [http://www.simulia.com/products/abaqus_fea.html abaqus/6.14.1] | ||
| align="center" | phys | | align="center" | phys | ||
| align="center" | | | align="center" | [[Abaqus]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA. Homepage: http://www.simulia.com/products/abaqus_fea.html Keyword:phys<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA. Homepage: http://www.simulia.com/products/abaqus_fea.html Keyword:phys CC-Wiki: Abaqus<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [http://www.abinit.org/ abinit/8.2.2] | | align="center" | [http://www.abinit.org/ abinit/8.2.2] | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. Homepage: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Keyword:chem<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. Homepage: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Keyword:chem<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4<br />'''Description:''' </div> | ||
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| align="center" | [http://www.tddft.org/programs/octopus/wiki/index.php/Libxc libxc/4.2.3] | |||
| align="center" | chem | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. Homepage: http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Keyword:chem<br />'''Prerequisites:''' gcc/7.3.0<br />'''Description:''' </div> | |||
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| align="center" | [https://github.com/hfp/libxsmm libxsmm/1.8] | | align="center" | [https://github.com/hfp/libxsmm libxsmm/1.8] | ||
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| align="center" | [[Quantum ESPRESSO]] | | align="center" | [[Quantum ESPRESSO]] | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). Homepage: http://www.pwscf.org/ Keyword:chem CC-Wiki: Quantum ESPRESSO<br />'''Prerequisites:''' intel/2016.4 and openmpi/2.1.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). Homepage: http://www.pwscf.org/ Keyword:chem CC-Wiki: Quantum ESPRESSO<br />'''Prerequisites:''' intel/2016.4 and openmpi/2.1.1<br />'''Description:''' </div> | ||
|- | |||
| align="center" | [http://www.pwscf.org/ quantumespresso/6.2.2] | |||
| align="center" | chem | |||
| align="center" | [[Quantum ESPRESSO]] | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). Homepage: http://www.pwscf.org/ Keyword:chem CC-Wiki: Quantum ESPRESSO<br />'''Prerequisites:''' gcc/7.3.0 and openmpi/3.1.2<br />'''Description:''' </div> | |||
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| align="center" | [http://www.pwscf.org/ quantumespresso/6.3] | | align="center" | [http://www.pwscf.org/ quantumespresso/6.3] | ||
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| align="center" | | | align="center" | | ||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: RepeatScout is a tool to discover repetitive substrings in DNA. Homepage: https://bix.ucsd.edu/repeatscout/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: RepeatScout is a tool to discover repetitive substrings in DNA. Homepage: https://bix.ucsd.edu/repeatscout/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | ||
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| align="center" | [https://github.com/chedinlab/rlooper.git rlooper/1.0] | |||
| align="center" | - | |||
| align="center" | | |||
| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: Extract sequences from a fastx file given a subsequence or identifier Homepage: https://github.com/chedinlab/rlooper.git<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer rnammer/1.2] | | align="center" | [http://www.cbs.dtu.dk/cgi-bin/sw_request?rnammer rnammer/1.2] | ||