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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. - Homepage: https://github.com/beagle-dev/beagle-lib Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. - Homepage: https://github.com/beagle-dev/beagle-lib Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | ||
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| align="center" | [http://beast.bio.ed.ac.uk/ beast/1.8.2] | |||
| align="center" | bio | |||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Homepage: http://beast.bio.ed.ac.uk/ Keyword:bio<br />'''Prerequisites:''' -<br />'''Description:''' </div> | |||
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| align="center" | [http://beast2.org/ beast/2.4.0] | | align="center" | [http://beast2.org/ beast/2.4.0] | ||
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| align="center" | bio | | align="center" | bio | ||
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| <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: TopHat is a fast splice junction mapper for RNA-Seq reads. | | <div class="mw-collapsible mw-collapsed" style="white-space: pre-line;"><br />Description: TopHat is a fast splice junction mapper for RNA-Seq reads. Homepage: http://ccb.jhu.edu/software/tophat/ Keyword:bio<br />'''Prerequisites:''' gcc/5.4.0 or intel/2016.4 or intel/2017.1<br />'''Description:''' </div> | ||
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| align="center" | [http://torch.ch/ torch/20170530] | | align="center" | [http://torch.ch/ torch/20170530] | ||