cc_staff
415
edits
GATK: Difference between revisions
Jump to navigation
Jump to search
→Running GATK via singularity
| Line 142: | Line 142: | ||
<pre> | <pre> | ||
module load singularity | module load singularity | ||
singularity exec -B /home -B /project -B /scratch -B /localscratch <path to the image>/gatk.sif gatk [--java-options "-Xmx4G"] ToolName [GATK args]</pre> | singularity exec -B /home -B /project -B /scratch -B /localscratch \ | ||
<path to the image>/gatk.sif gatk [--java-options "-Xmx4G"] ToolName [GATK args]</pre> | |||
For more information about Singularity, you can watch the recorded [https://www.youtube.com/watch?v=kYb0aXS5DEE Singularity webinar]. | For more information about Singularity, you can watch the recorded [https://www.youtube.com/watch?v=kYb0aXS5DEE Singularity webinar]. | ||